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Add Tests for Parser

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This commit is contained in:
James Kolpack
2023-02-17 09:22:38 -05:00
parent fba6cdf56a
commit 54e42f2e3a
4 changed files with 63 additions and 2 deletions
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Core.Tests/Core.Tests.csproj
+3
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@@ -101,6 +101,9 @@
<Content Include="Parsers\LeafInputData\LeafInput-JN_1.csv">
<CopyToOutputDirectory>PreserveNewest</CopyToOutputDirectory>
</Content>
<Content Include="Parsers\LeafInputData\LeafInput-cleaned-columns-moved.csv">
<CopyToOutputDirectory>PreserveNewest</CopyToOutputDirectory>
</Content>
<None Include="Parsers\LeafInputData\LeafInput-tabSeparated.csv" />
<Content Include="Parsers\LeafOutputData\cntrlbestparameters_Wild Capsicum.csv">
<CopyToOutputDirectory>PreserveNewest</CopyToOutputDirectory>
Core.Tests/Parsers/LeafInputCsvParserTests.cs
+27 -1
View File
@@ -27,7 +27,7 @@ namespace LeafWeb.Core.Tests.Parsers
Assert.That(site.Latitude, Is.EqualTo(-20.75d));
var photosynthetic = input.Photosynthetic;
Assert.That(photosynthetic.GammaStar, Is.EqualTo(0));
Assert.That(photosynthetic.GammaStar, Is.EqualTo(10));
var data = input.Data;
Assert.That(data.Count(), Is.GreaterThan(2));
@@ -36,6 +36,32 @@ namespace LeafWeb.Core.Tests.Parsers
Assert.That(dataItem.Photo, Is.EqualTo(10.49195882));
}
[Test]
public void Parse_Columns_Moved()
{
var originalFileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-cleaned.csv");
var columnsMovedFileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-cleaned-columns-moved.csv");
var originalParser = new LeafInputCsvParser(originalFileInfo);
var columnsMovedParser = new LeafInputCsvParser(columnsMovedFileInfo);
var original = originalParser.Parse();
var columnsMoved = columnsMovedParser.Parse();
Assert.That(columnsMoved.ContactInformation, Is.EqualTo("validcleaned@yahoo.com.br"));
Assert.AreEqual(original.Site.Elevation, columnsMoved.Site.Elevation);
Assert.AreEqual(original.Site.Latitude, columnsMoved.Site.Latitude);
Assert.AreEqual(original.Site.AverageTimeResolution, columnsMoved.Site.AverageTimeResolution);
Assert.AreEqual(original.Site.SampleYear, columnsMoved.Site.SampleYear);
Assert.AreEqual(original.Photosynthetic.GammaStar, columnsMoved.Photosynthetic.GammaStar);
for (var i = 0; i < original.Data.Count; i++)
{
Assert.AreEqual(original.Data.Skip(i).First().CO2S, columnsMoved.Data.Skip(i).First().CO2S);
Assert.AreEqual(original.Data.Skip(i).First().AdjPhoto, columnsMoved.Data.Skip(i).First().AdjPhoto);
}
}
[Test]
public void Parse_Cleaned_AnnaDay1()
{
Core.Tests/Parsers/LeafInputData/LeafInput-cleaned-columns-moved.csv
+32
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@@ -0,0 +1,32 @@
Investigator name: Valid Cleaned,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Site name in full: NA,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Contact information: validcleaned@yahoo.com.br,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Vegetation type: NA,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Soil type: NA,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Major species: NA,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Sample leaf light environment: Full Sun,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
"Water_stress_assessment:_No_water_stress, plants_irrigated_every_day",,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Instrument used: Licor-6400XT,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Extra info:,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
SiteID,Latitude(Degrees),Longitude(Degrees),Elevation,SampleYear,SampleDayOfYear,GrowSeasonStart,GrowSeasonEnd,StandAge,CanopyHeight,LeafAreaIndex,SpeciesSampled,AveTimeResolution,SampleHeight,LeafAge,SpecificLeafArea,LfNitrogenContent,LfCarbonContent,LfPhosphContent,,,,,,,,,,,,,
NoUnit,NorthPositive,EastPositive,m,NoUnit,DayOfYear,DayOfYear,DayOfYear,Year,m,m2/m2,NoBlankSpace,Minutes,m,days,cm2/g,%,%,%,,,,,,,,,,,,,
-9999,-20.75,-42.88,648,2009,-9999,-9999,-9999,-9999,-9999,-9999,CoffeaArabica,-9999,-9999,-9999,140,3.48,-9999,-9999,,,,,,,,,,,,,
Kc,Ko,Alpha,Rd,gi,Gamma*,,,,,,,,,,,,,,,,,,,,,,,,,,
Pa,Pa,NoUnit,umol/m2/s,umol/m2/s/Pa,Pa,,,,,,,,,,,,,,,,,,,,,,,,,,
-9999,-9999,-9999,-9999,-9999,10,,,,,,,,,,,,,,,,,,,,,,,,,,
CO2S,Obs,HHMMSS,FTime,Photo,!AdjPhoto,!StomCond,!Ci,!Trmmol,!VpdL,Area,StmRat,BLCond,Tair,!Tleaf,TBlk,CO2R,H2OR,H2OS,RH_R,RH_S,Flow,!PARi,PARo,Press,CsMch,HsMch,StableF,Status,PhiPS2,OxygenPress,NewParam
umol/mol,NoUnit,HHMMSS,Second,umol/m2/s,umol/m2/s,mol/m2/s,umol/mol,mmol/m2/s,kPa,cm2,NA,mol/m2/s,oC,oC,oC,umol/mol,mmol/mol,mmol/mol,%,%,umol/s,umol/m2/s,umol/m2/s,Kpa,umol/mol,mmol/mol,NA,NA,NA,KPA,New
292.5618317,10,-9999,-9999,10.49195882,11.05941043,0.244883469,212.5041051,2.63076876,1.036135144,2,0,4.644859791,23.52121258,23.53769627,23.3545414,300.0483063,18.24994297,19.96389828,58.95560608,64.49247513,300.8535187,993.0888855,0.049617826,94.00339508,-2.052112579,-0.246214688,0.425,111115,0.180769687,21,1
195.4142136,10,-9999,-9999,6.613751647,7.414357534,0.200000749,130.8730299,2.24618742,1.072960558,2,0,4.644859791,23.57428112,23.68962097,23.40673904,200.1022598,18.39681854,19.86024399,59.23092155,63.94262123,300.8801514,992.5410278,0.049735996,93.98853455,-1.348773956,-0.243325055,0.475,111115,0.163288942,21,2
146.4719864,10,-9999,-9999,4.431079608,5.349146841,0.170652088,92.42684697,2.00393304,1.114947396,2,0,4.644859791,23.58453674,23.90329285,23.41538334,149.6127335,18.51102257,19.8167675,59.56615295,63.76787758,300.8583466,992.1625671,0.054449931,93.9954071,-1.367557526,-0.230450451,0.375,111115,0.147352806,21,3
98.51480789,10,-9999,-9999,1.523393138,2.556557599,0.159880602,70.4656295,1.965014975,1.163792845,2,0,4.644859791,23.59998169,24.21637478,23.43008366,99.656147,18.61892796,19.89914742,59.85464211,63.97018967,300.8723236,991.761908,0.039717828,93.9906868,-0.692935944,-0.232964337,0.575,111115,0.130597749,21,4
73.31520309,10,-9999,-9999,0.894293187,1.987936699,0.167650406,52.50296582,2.025541888,1.145843431,2,0,4.644859791,23.62822838,24.19524651,23.45776844,74.00842819,18.72938271,20.0488924,60.108358,64.34307251,300.8590363,991.5204651,0.045964496,93.99226608,-0.604091644,-0.238077939,0.575,111115,0.122154858,21,5
49.07753906,10,-9999,-9999,-0.495843139,0.655970767,0.176641615,42.05656346,2.078428704,1.118051438,2,0,4.644859791,23.63969841,24.11649742,23.46931267,48.81573753,18.83879395,20.19250221,60.41828194,64.75978699,300.871344,991.50896,0.042428688,93.99311447,-0.591835022,-0.238228619,0.7,111115,0.11011836,21,A
389.8589264,10,-9999,-9999,14.01214221,14.34608078,0.188886895,258.1956724,2.081065547,1.052338661,2,0,4.644859791,23.63486118,23.77918701,23.46806164,399.7125275,18.8980257,20.25335598,60.6206089,64.96820526,300.8738037,991.5494934,0.06246434,93.98490219,-3.991065979,-0.239916623,0.35,111115,0.183856114,21,B
587.4440186,10,-9999,-9999,19.20963114,19.06936549,0.167346311,390.2278007,1.923908779,1.090216329,2,0,4.644859791,23.6730854,23.97962074,23.50691929,600.9658813,18.97605591,20.22919121,60.72654266,64.73679276,300.8435883,990.6557251,0.06564644,93.97809906,-4.053321838,-0.263443768,0.6,111115,0.224674063,21,C
783.7866455,10,-9999,-9999,22.68315779,22.07166985,0.140898278,513.7169863,1.709378251,1.143940773,2,0,4.644859791,23.72432709,24.24497566,23.55486546,799.7560669,19.05482311,20.1682272,60.79165916,64.34382095,300.861908,990.5349609,0.044432433,93.97946396,-6.789344788,-0.258801281,0.625,111115,0.241833394,21,D
981.9117737,10,-9999,-9999,25.21838506,24.1313968,0.128254365,657.3239246,1.569373475,1.150702993,2,0,4.644859791,23.77119751,24.27973061,23.60147991,999.7003906,19.14113102,20.16335564,60.89594879,64.14807434,300.8594788,990.3832764,0.037125352,93.98093872,-10.22812653,-0.260886014,0.65,111115,0.250284039,21,E
1181.568982,10,-9999,-9999,27.03077557,25.46461001,0.120765245,816.0761447,1.52318325,1.183928533,2,0,4.644859791,23.80861893,24.49090347,23.63921146,1200.733826,19.23064556,20.22269268,61.04207878,64.19104309,300.8688538,990.2308533,0.058457612,93.97930527,-14.02487946,-0.262095273,0.575,111115,0.252074273,21,F
1379.865356,10,-9999,-9999,28.6322564,26.59017955,0.117258539,984.2999029,1.510964689,1.208454852,2,0,4.644859791,23.86426582,24.66598072,23.69386177,1400.285156,19.32225647,20.30630074,61.13061714,64.24388199,300.8569305,990.0950989,0.060696683,93.9834198,-17.98886871,-0.264069378,0.65,111115,0.25113703,21,G
1579.277905,10,-9999,-9999,29.59434444,27.07367747,0.111042426,1152.036476,1.451859088,1.224292598,2,0,4.644859791,23.92603722,24.77762184,23.75417137,1600.474329,19.41603336,20.36147785,61.19426117,64.17406006,300.8736847,989.9327454,0.052446734,93.97519684,-22.0407486,-0.271241009,0.65,111115,0.252735204,21,H
1977.797449,10,-9999,-9999,30.43679512,26.95968124,0.103627708,1515.947025,1.36954251,1.235421377,2,0,4.644859791,23.97047672,24.84818077,23.79694042,1999.831714,19.49336185,20.38523922,61.27052002,64.07382736,300.8539337,989.8097778,0.061404274,93.96966782,-31.06003571,-0.273886502,0.625,111115,0.248197252,21,I
1 Investigator name: Valid Cleaned
2 Site name in full: NA
3 Contact information: validcleaned@yahoo.com.br
4 Vegetation type: NA
5 Soil type: NA
6 Major species: NA
7 Sample leaf light environment: Full Sun
8 Water_stress_assessment:_No_water_stress, plants_irrigated_every_day
9 Instrument used: Licor-6400XT
10 Extra info:
11 SiteID Latitude(Degrees) Longitude(Degrees) Elevation SampleYear SampleDayOfYear GrowSeasonStart GrowSeasonEnd StandAge CanopyHeight LeafAreaIndex SpeciesSampled AveTimeResolution SampleHeight LeafAge SpecificLeafArea LfNitrogenContent LfCarbonContent LfPhosphContent
12 NoUnit NorthPositive EastPositive m NoUnit DayOfYear DayOfYear DayOfYear Year m m2/m2 NoBlankSpace Minutes m days cm2/g % % %
13 -9999 -20.75 -42.88 648 2009 -9999 -9999 -9999 -9999 -9999 -9999 CoffeaArabica -9999 -9999 -9999 140 3.48 -9999 -9999
14 Kc Ko Alpha Rd gi Gamma*
15 Pa Pa NoUnit umol/m2/s umol/m2/s/Pa Pa
16 -9999 -9999 -9999 -9999 -9999 10
17 CO2S Obs HHMMSS FTime Photo !AdjPhoto !StomCond !Ci !Trmmol !VpdL Area StmRat BLCond Tair !Tleaf TBlk CO2R H2OR H2OS RH_R RH_S Flow !PARi PARo Press CsMch HsMch StableF Status PhiPS2 OxygenPress NewParam
18 umol/mol NoUnit HHMMSS Second umol/m2/s umol/m2/s mol/m2/s umol/mol mmol/m2/s kPa cm2 NA mol/m2/s oC oC oC umol/mol mmol/mol mmol/mol % % umol/s umol/m2/s umol/m2/s Kpa umol/mol mmol/mol NA NA NA KPA New
19 292.5618317 10 -9999 -9999 10.49195882 11.05941043 0.244883469 212.5041051 2.63076876 1.036135144 2 0 4.644859791 23.52121258 23.53769627 23.3545414 300.0483063 18.24994297 19.96389828 58.95560608 64.49247513 300.8535187 993.0888855 0.049617826 94.00339508 -2.052112579 -0.246214688 0.425 111115 0.180769687 21 1
20 195.4142136 10 -9999 -9999 6.613751647 7.414357534 0.200000749 130.8730299 2.24618742 1.072960558 2 0 4.644859791 23.57428112 23.68962097 23.40673904 200.1022598 18.39681854 19.86024399 59.23092155 63.94262123 300.8801514 992.5410278 0.049735996 93.98853455 -1.348773956 -0.243325055 0.475 111115 0.163288942 21 2
21 146.4719864 10 -9999 -9999 4.431079608 5.349146841 0.170652088 92.42684697 2.00393304 1.114947396 2 0 4.644859791 23.58453674 23.90329285 23.41538334 149.6127335 18.51102257 19.8167675 59.56615295 63.76787758 300.8583466 992.1625671 0.054449931 93.9954071 -1.367557526 -0.230450451 0.375 111115 0.147352806 21 3
22 98.51480789 10 -9999 -9999 1.523393138 2.556557599 0.159880602 70.4656295 1.965014975 1.163792845 2 0 4.644859791 23.59998169 24.21637478 23.43008366 99.656147 18.61892796 19.89914742 59.85464211 63.97018967 300.8723236 991.761908 0.039717828 93.9906868 -0.692935944 -0.232964337 0.575 111115 0.130597749 21 4
23 73.31520309 10 -9999 -9999 0.894293187 1.987936699 0.167650406 52.50296582 2.025541888 1.145843431 2 0 4.644859791 23.62822838 24.19524651 23.45776844 74.00842819 18.72938271 20.0488924 60.108358 64.34307251 300.8590363 991.5204651 0.045964496 93.99226608 -0.604091644 -0.238077939 0.575 111115 0.122154858 21 5
24 49.07753906 10 -9999 -9999 -0.495843139 0.655970767 0.176641615 42.05656346 2.078428704 1.118051438 2 0 4.644859791 23.63969841 24.11649742 23.46931267 48.81573753 18.83879395 20.19250221 60.41828194 64.75978699 300.871344 991.50896 0.042428688 93.99311447 -0.591835022 -0.238228619 0.7 111115 0.11011836 21 A
25 389.8589264 10 -9999 -9999 14.01214221 14.34608078 0.188886895 258.1956724 2.081065547 1.052338661 2 0 4.644859791 23.63486118 23.77918701 23.46806164 399.7125275 18.8980257 20.25335598 60.6206089 64.96820526 300.8738037 991.5494934 0.06246434 93.98490219 -3.991065979 -0.239916623 0.35 111115 0.183856114 21 B
26 587.4440186 10 -9999 -9999 19.20963114 19.06936549 0.167346311 390.2278007 1.923908779 1.090216329 2 0 4.644859791 23.6730854 23.97962074 23.50691929 600.9658813 18.97605591 20.22919121 60.72654266 64.73679276 300.8435883 990.6557251 0.06564644 93.97809906 -4.053321838 -0.263443768 0.6 111115 0.224674063 21 C
27 783.7866455 10 -9999 -9999 22.68315779 22.07166985 0.140898278 513.7169863 1.709378251 1.143940773 2 0 4.644859791 23.72432709 24.24497566 23.55486546 799.7560669 19.05482311 20.1682272 60.79165916 64.34382095 300.861908 990.5349609 0.044432433 93.97946396 -6.789344788 -0.258801281 0.625 111115 0.241833394 21 D
28 981.9117737 10 -9999 -9999 25.21838506 24.1313968 0.128254365 657.3239246 1.569373475 1.150702993 2 0 4.644859791 23.77119751 24.27973061 23.60147991 999.7003906 19.14113102 20.16335564 60.89594879 64.14807434 300.8594788 990.3832764 0.037125352 93.98093872 -10.22812653 -0.260886014 0.65 111115 0.250284039 21 E
29 1181.568982 10 -9999 -9999 27.03077557 25.46461001 0.120765245 816.0761447 1.52318325 1.183928533 2 0 4.644859791 23.80861893 24.49090347 23.63921146 1200.733826 19.23064556 20.22269268 61.04207878 64.19104309 300.8688538 990.2308533 0.058457612 93.97930527 -14.02487946 -0.262095273 0.575 111115 0.252074273 21 F
30 1379.865356 10 -9999 -9999 28.6322564 26.59017955 0.117258539 984.2999029 1.510964689 1.208454852 2 0 4.644859791 23.86426582 24.66598072 23.69386177 1400.285156 19.32225647 20.30630074 61.13061714 64.24388199 300.8569305 990.0950989 0.060696683 93.9834198 -17.98886871 -0.264069378 0.65 111115 0.25113703 21 G
31 1579.277905 10 -9999 -9999 29.59434444 27.07367747 0.111042426 1152.036476 1.451859088 1.224292598 2 0 4.644859791 23.92603722 24.77762184 23.75417137 1600.474329 19.41603336 20.36147785 61.19426117 64.17406006 300.8736847 989.9327454 0.052446734 93.97519684 -22.0407486 -0.271241009 0.65 111115 0.252735204 21 H
32 1977.797449 10 -9999 -9999 30.43679512 26.95968124 0.103627708 1515.947025 1.36954251 1.235421377 2 0 4.644859791 23.97047672 24.84818077 23.79694042 1999.831714 19.49336185 20.38523922 61.27052002 64.07382736 300.8539337 989.8097778 0.061404274 93.96966782 -31.06003571 -0.273886502 0.625 111115 0.248197252 21 I
Core.Tests/Parsers/LeafInputData/LeafInput-cleaned.csv
+1 -1
View File
@@ -13,7 +13,7 @@ NoUnit,NorthPositive,EastPositive,m,NoUnit,DayOfYear,DayOfYear,DayOfYear,Year,m,
-9999,-20.75,-42.88,648,2009,-9999,-9999,-9999,-9999,-9999,-9999,CoffeaArabica,-9999,-9999,-9999,140,3.48,-9999,-9999
Gamma*,Kc,Ko,Alpha,Rd,gi
Pa,Pa,Pa,NoUnit,umol/m2/s,umol/m2/s/Pa
-9999,-9999,-9999,-9999,-9999,-9999
10,-9999,-9999,-9999,-9999,-9999
Obs,HHMMSS,FTime,Photo,!AdjPhoto,!StomCond,!Ci,!Trmmol,!VpdL,Area,StmRat,BLCond,Tair,!Tleaf,TBlk,CO2R,CO2S,H2OR,H2OS,RH_R,RH_S,Flow,!PARi,PARo,Press,CsMch,HsMch,StableF,Status,PhiPS2,OxygenPress
NoUnit,HHMMSS,Second,umol/m2/s,umol/m2/s,mol/m2/s,umol/mol,mmol/m2/s,kPa,cm2,NA,mol/m2/s,oC,oC,oC,umol/mol,umol/mol,mmol/mol,mmol/mol,%,%,umol/s,umol/m2/s,umol/m2/s,Kpa,umol/mol,mmol/mol,NA,NA,NA,KPA
10,-9999,-9999,10.49195882,11.05941043,0.244883469,212.5041051,2.63076876,1.036135144,2,0,4.644859791,23.52121258,23.53769627,23.3545414,300.0483063,292.5618317,18.24994297,19.96389828,58.95560608,64.49247513,300.8535187,993.0888855,0.049617826,94.00339508,-2.052112579,-0.246214688,0.425,111115,0.180769687,21
1 Investigator name: Valid Cleaned
13 -9999
14 Gamma*
15 Pa
16 -9999 10
17 Obs
18 NoUnit
19 10