703 lines
30 KiB
FortranFixed
703 lines
30 KiB
FortranFixed
subroutine ToLeafGasOptimization(ic3c4cam,ntotfiles,ACidata,
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&dataunit,spareunit,datapath,indexunit,ierr)
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implicit none
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!--------------All inputs except for ierr. Outputs are written to files----------------
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integer ic3c4cam,ntotfiles,dataunit,spareunit,ierr(2),
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&indexunit(20)
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!ierr(1)=0, ok, >=1 input data out of range
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!ierr(2) specifies in which input file, the data is out of range
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character*100 datapath,ACidata(ntotfiles)
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!-------------------------------------------------------------------------------
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integer ntotpoints,npoints(ntotfiles),i,j,k,n,curveno(ntotfiles),
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&iobs,maxobs,nmax,iwarning,warningunit,isitmassbased(ntotfiles),
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&iprintheader(ntotfiles),ivector(1000),startline,errorunit
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parameter(maxobs=2000,nmax=100)
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character*100 sample(ntotfiles)
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character*50 chartime,siteID(ntotfiles),species(ntotfiles),ftime,
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&longchar1*50000,longchar*5000,charvars(500),
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&woodporosity(ntotfiles)
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double precision esat,Latitude(ntotfiles),Longitude(ntotfiles),
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&Elevation(ntotfiles),yearsampled(ntotfiles),sampledoy(ntotfiles),
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&GrowingSeasonStart(ntotfiles),GrowingSeasonEnd(ntotfiles),
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&standage(ntotfiles),CanopyHeight(ntotfiles),
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&LeafAreaIndex(ntotfiles),MeanTimeBtwnSteadyReadings(ntotfiles),
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&SampleHeight(ntotfiles),Needleage(ntotfiles),
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&specificLAI(ntotfiles),nitrogencontent(ntotfiles),
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&carboncontent(ntotfiles),avetimeresolution(ntotfiles),
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&avetimesampled(ntotfiles),phoscontent(ntotfiles),
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&sapwooddensity(ntotfiles),leafratio(ntotfiles),
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&stom_COND_mol,CO2i_ppm,transp_mmol,vpdl_KPa,BLCond,Tair_oC,
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&Tleaf_oC,CO2chamber_ppm,H2OS_mmol,RH_S100,PARi_umol,Press_KPa,
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&oxygeni_KPa,PNcor_umol,uncorphoto,chamberarea,stmrad,tblk,co2r,
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&h2or,rh_r,flow,paro,csmch,hsmch,stablef,listatus,phips2,
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&ambientvaporpres,pari(ntotfiles,maxobs),
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&templeaf(ntotfiles,maxobs),pres_air(ntotfiles,maxobs),
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&yAnet(ntotfiles,maxobs),po2i(ntotfiles,maxobs),
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&trmmol(ntotfiles,maxobs),gswmeas(ntotfiles,maxobs),
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&vpdl(ntotfiles,maxobs),tempair(ntotfiles,maxobs),
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&eambient(ntotfiles,maxobs),xpco2i_ppm(ntotfiles,maxobs),
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&xpco2i(ntotfiles,maxobs),co2a_ppm(ntotfiles,maxobs),
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&pco2ambient(ntotfiles,maxobs),sampletime(ntotfiles,maxobs),
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&chlflphips2(ntotfiles,maxobs),CurveTypeID(ntotfiles,maxobs),
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&fo_pam(ntotfiles,maxobs),fm_pam(ntotfiles,maxobs),
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&fs_pam(ntotfiles,maxobs),pam_measlight(ntotfiles,maxobs),
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&vectorhorse(maxobs),stargamma25_usr(ntotfiles),
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&fkc25_usr(ntotfiles),fko25_usr(ntotfiles),tissuearea,tissuemass,
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&rdlight25_usr(ntotfiles),alpha25_usr(ntotfiles),datumlimit,
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&resistwp25_usr(ntotfiles),resistch25_usr(ntotfiles),gtc,gtw,
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&term,term1,H2OLeaf_mmol,fo_fluoresce,fm_fluoresce,fs_fluoresce,
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&f_measlight,stdpar,fmeanpar,xminpar,xmaxpar,
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&stdco2,fmeanco2,xminco2,xmaxco2
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!
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warningunit=indexunit(10)
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errorunit=indexunit(11)
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ierr(1)=0
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if(ic3c4cam.ne.1.and.ic3c4cam.ne.2)then
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write(errorunit,*)'The analysis for CAM photosyntehsis is still
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&under development. Check out LeafWeb for this function later.'
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ierr(1)=1
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return
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endif
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! open(unit=121,file='sphagnumdata.csv')
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! write(121,'(200A)')'name,','hhmmss,','no,','time,','datumlimit,',
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! &'stom_COND_mol,','CO2chamber_ppm,','CO2i_ppm,','PARi_umol,',
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! &'Tleaf_oC,','Tair_oC,','transp_mmol,','PNcor_umol,','H2OS_mmol,',
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! &'RH_S100'
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!We read all files at once
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do 10 i=1,ntotfiles
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isitmassbased(i)=0
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iwarning=0
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ierr(2)=i
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npoints(i)=0
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sample(i)=trim(ACidata(i))
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!fill any blank spaces in sample(i) with '_'
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1 j=index(trim(sample(i)),' ')
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if(j.gt.0)then
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sample(i)(j:j)='_'
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goto 1
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endif
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curveno(i)=i
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!
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!========================================================================================================================
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!In early 2015, the following section of code is added to allow flexibity for the starting rows to be used for metadata.
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!There is no need for a strict number of rows for metadata because the main data section is now determined automatically.
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!Locate the rows for the actual data
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open(unit=spareunit,file=trim(datapath)//trim(ACidata(i)))
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read(spareunit,fmt=300,err=35,end=35)longchar1
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rewind(spareunit)
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open(unit=dataunit,file=
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&trim(datapath)//trim(ACidata(i))//'middle')
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2 read(spareunit,fmt=300,err=35,end=5)longchar1
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3 k=index(longchar1,char(13))
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if(k.gt.0)then
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!DOS text format, convert it to unix format
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longchar1(k:k+len(char(10))-1)=char(10)
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goto 3
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endif
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write(dataunit,340)trim(longchar1)
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goto 2
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5 close(spareunit)
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rewind(dataunit)
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open(unit=spareunit,file=
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&trim(datapath)//'clean'//trim(ACidata(i)))
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7 read(dataunit,fmt=310,err=36,end=9)longchar
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if(longchar.eq.''.or.longchar.eq.' ')goto 7
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call charlineparser(longchar,nmax,charvars,n)
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if(n.eq.0)goto 7
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write(spareunit,340)trim(longchar)
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goto 7
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9 rewind(spareunit)
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close(dataunit,status='delete')
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j=0
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500 read(spareunit,fmt=310,err=40,end=600)longchar
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call charlineparser(longchar,nmax,charvars,n)
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j=j+1
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ivector(j)=n
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goto 500
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600 rewind(spareunit)
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startline=0
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610 startline=startline+1
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if(j.lt.12.or.startline.gt.j-11)then
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if(ierr(2).gt.0)then
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write(errorunit,*)'Input data error in ',trim(ACidata(i))
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write(errorunit,*)
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&'Please resubmit the data after correcting the following error:'
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ierr(2)=-ierr(2)
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endif
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write(errorunit,*)'This file has incorrect data format or does
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¬ contain data'
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ierr(1)=1
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goto 630
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endif
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n=0
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if(ivector(startline).ne.ivector(startline+1))n=1
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if(ivector(startline).ne.ivector(startline+2))n=1
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if(ivector(startline+2).lt.15.or.ivector(startline+2).gt.25)n=1
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if(ivector(startline+3).ne.ivector(startline+4))n=1
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if(ivector(startline+3).ne.ivector(startline+5))n=1
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if(ivector(startline+5).lt.5.or.ivector(startline+5).gt.10)n=1
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if(ivector(startline+6).ne.ivector(startline+7))n=1
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if(ivector(startline+6).ne.ivector(startline+8))n=1
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if(ivector(startline+8).ne.ivector(startline+9))n=1
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if(ivector(startline+8).ne.ivector(startline+10))n=1
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if(ivector(startline+8).ne.ivector(startline+11))n=1
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if(ivector(startline+8).lt.25)n=1
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if(n.eq.1)goto 610
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!startline is the line 'Elevation,SampleYear,SampleDayOfYear.....'
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!In general
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!Line 1-10 describe the general information about the data
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!Line 11-12 are the header lines for line 13
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!Line 13 gives the site information and the data about the leaf sampled
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!Line 14-15 are the header lines for lines 16
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!Line 16 user-supplied parameter values
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!Line 17-18 are the header lines for lines 19 and higer
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!Line 19 and higher: actual gas exchange data
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do j=1,startline+1
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read(spareunit,*)
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enddo
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!=========================================================================================================================
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read(spareunit,fmt=310,err=40)longchar
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call charlineparser(longchar,nmax,charvars,n)
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do j=n+1,nmax
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charvars(j)='-9999'
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enddo
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siteID(i)=trim(charvars(1))
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species(i)=trim(charvars(12))
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woodporosity(i)=trim(charvars(20))
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n=len(trim(charvars(2)))
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call extCharToFloatNum(n,charvars(2),Latitude(i),j)
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n=len(trim(charvars(3)))
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call extCharToFloatNum(n,charvars(3),Longitude(i),j)
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n=len(trim(charvars(4)))
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call extCharToFloatNum(n,charvars(4),Elevation(i),j)
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n=len(trim(charvars(5)))
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call extCharToFloatNum(n,charvars(5),yearsampled(i),j)
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n=len(trim(charvars(6)))
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call extCharToFloatNum(n,charvars(6),sampledoy(i),j)
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n=len(trim(charvars(7)))
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call extCharToFloatNum(n,charvars(7),GrowingSeasonStart(i),j)
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n=len(trim(charvars(8)))
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call extCharToFloatNum(n,charvars(8),GrowingSeasonEnd(i),j)
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n=len(trim(charvars(9)))
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call extCharToFloatNum(n,charvars(9),standage(i),j)
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n=len(trim(charvars(10)))
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call extCharToFloatNum(n,charvars(10),CanopyHeight(i),j)
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n=len(trim(charvars(11)))
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call extCharToFloatNum(n,charvars(11),LeafAreaIndex(i),j)
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n=len(trim(charvars(13)))
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call extCharToFloatNum(n,charvars(13),
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&MeanTimeBtwnSteadyReadings(i),j)
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n=len(trim(charvars(14)))
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call extCharToFloatNum(n,charvars(14),SampleHeight(i),j)
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n=len(trim(charvars(15)))
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call extCharToFloatNum(n,charvars(15),Needleage(i),j)
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n=len(trim(charvars(16)))
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call extCharToFloatNum(n,charvars(16),specificLAI(i),j)
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n=len(trim(charvars(17)))
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call extCharToFloatNum(n,charvars(17),nitrogencontent(i),j)
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n=len(trim(charvars(18)))
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call extCharToFloatNum(n,charvars(18),carboncontent(i),j)
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n=len(trim(charvars(19)))
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call extCharToFloatNum(n,charvars(19),phoscontent(i),j)
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n=len(trim(charvars(21)))
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call extCharToFloatNum(n,charvars(21),sapwooddensity(i),j)
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n=len(trim(charvars(22)))
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call extCharToFloatNum(n,charvars(22),leafratio(i),j)
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do j=1,2
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read(spareunit,*)
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enddo
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read(spareunit,fmt=310,err=40)longchar
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call charlineparser(longchar,nmax,charvars,n)
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do j=n+1,nmax
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charvars(j)='-9999'
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enddo
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n=len(trim(charvars(1)))
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call extCharToFloatNum(n,charvars(1),stargamma25_usr(i),j)
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n=len(trim(charvars(2)))
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call extCharToFloatNum(n,charvars(2),fkc25_usr(i),j)
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n=len(trim(charvars(3)))
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call extCharToFloatNum(n,charvars(3),fko25_usr(i),j)
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n=len(trim(charvars(4)))
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call extCharToFloatNum(n,charvars(4),alpha25_usr(i),j)
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n=len(trim(charvars(5)))
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call extCharToFloatNum(n,charvars(5),rdlight25_usr(i),j)
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n=len(trim(charvars(6)))
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call extCharToFloatNum(n,charvars(6),resistwp25_usr(i),j)
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n=len(trim(charvars(7)))
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call extCharToFloatNum(n,charvars(7),resistch25_usr(i),j)
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if(stargamma25_usr(i).lt.0.0d0.or.
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&stargamma25_usr(i).gt.500.0d0)stargamma25_usr(i)=-9999.0d0
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if(fkc25_usr(i).lt.0.0d0.or.fkc25_usr(i).gt.5000.0d0)
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&fkc25_usr(i)=-9999.0d0
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if(fko25_usr(i).lt.0.0d0.or.fko25_usr(i).gt.90000.0d0)
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&fko25_usr(i)=-9999.0d0
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if(alpha25_usr(i).lt.0.0d0.or.alpha25_usr(i).gt.1.0d0)
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&alpha25_usr(i)=-9999.0d0
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if(rdlight25_usr(i).lt.0.0d0.or.rdlight25_usr(i).gt.100.0d0)
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&rdlight25_usr(i)=-9999.0d0
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if(resistwp25_usr(i).lt.0.0d0.or.resistwp25_usr(i).gt.10000.0d0)
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&resistwp25_usr(i)=-9999.0d0
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if(resistwp25_usr(i).lt.0.0d0.or.resistwp25_usr(i).gt.10000.0d0)
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&resistch25_usr(i)=-9999.0d0
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do j=1,2
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read(spareunit,*)
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enddo
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20 read(spareunit,fmt=310,err=40,end=100)longchar
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call charlineparser(longchar,nmax,charvars,n)
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if(n.le.25)goto 20
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do j=n+1,nmax
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charvars(j)='-9999'
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enddo
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chartime=trim(charvars(2))
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ftime=trim(charvars(3))
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n=len(trim(charvars(1)))
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call extCharToFloatNum(n,charvars(1),term,j)
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iObs=idnint(term)
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n=len(trim(charvars(4)))
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call extCharToFloatNum(n,charvars(4),uncorphoto,j)
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n=len(trim(charvars(5)))
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call extCharToFloatNum(n,charvars(5),PNcor_umol,j)
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if(dabs(PNcor_umol+9999.0d0).lt.1.0d-4)PNcor_umol=uncorphoto
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n=len(trim(charvars(6)))
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call extCharToFloatNum(n,charvars(6),stom_COND_mol,j)
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n=len(trim(charvars(7)))
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call extCharToFloatNum(n,charvars(7),CO2i_ppm,j)
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n=len(trim(charvars(8)))
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call extCharToFloatNum(n,charvars(8),transp_mmol,j)
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n=len(trim(charvars(9)))
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call extCharToFloatNum(n,charvars(9),vpdl_KPa,j)
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n=len(trim(charvars(10)))
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call extCharToFloatNum(n,charvars(10),chamberarea,j)
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n=len(trim(charvars(11)))
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call extCharToFloatNum(n,charvars(11),stmrad,j)
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n=len(trim(charvars(12)))
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call extCharToFloatNum(n,charvars(12),BLCond,j)
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n=len(trim(charvars(13)))
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call extCharToFloatNum(n,charvars(13),Tair_oC,j)
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n=len(trim(charvars(14)))
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call extCharToFloatNum(n,charvars(14),Tleaf_oC,j)
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n=len(trim(charvars(15)))
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call extCharToFloatNum(n,charvars(15),tblk,j)
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n=len(trim(charvars(16)))
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call extCharToFloatNum(n,charvars(16),co2r,j)
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n=len(trim(charvars(17)))
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call extCharToFloatNum(n,charvars(17),CO2chamber_ppm,j)
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n=len(trim(charvars(18)))
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call extCharToFloatNum(n,charvars(18),h2or,j)
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n=len(trim(charvars(19)))
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call extCharToFloatNum(n,charvars(19),H2OS_mmol,j)
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n=len(trim(charvars(20)))
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call extCharToFloatNum(n,charvars(20),rh_r,j)
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n=len(trim(charvars(21)))
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call extCharToFloatNum(n,charvars(21),RH_S100,j)
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n=len(trim(charvars(22)))
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call extCharToFloatNum(n,charvars(22),flow,j)
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n=len(trim(charvars(23)))
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call extCharToFloatNum(n,charvars(23),PARi_umol,j)
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n=len(trim(charvars(24)))
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call extCharToFloatNum(n,charvars(24),paro,j)
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n=len(trim(charvars(25)))
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call extCharToFloatNum(n,charvars(25),Press_KPa,j)
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n=len(trim(charvars(26)))
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call extCharToFloatNum(n,charvars(26),csmch,j)
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n=len(trim(charvars(27)))
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call extCharToFloatNum(n,charvars(27),hsmch,j)
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n=len(trim(charvars(28)))
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call extCharToFloatNum(n,charvars(28),stablef,j)
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n=len(trim(charvars(29)))
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call extCharToFloatNum(n,charvars(29),listatus,j)
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n=len(trim(charvars(30)))
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call extCharToFloatNum(n,charvars(30),phips2,j)
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n=len(trim(charvars(31)))
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call extCharToFloatNum(n,charvars(31),oxygeni_KPa,j)
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n=len(trim(charvars(32)))
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call extCharToFloatNum(n,charvars(32),datumlimit,j)
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n=len(trim(charvars(33)))
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call extCharToFloatNum(n,charvars(33),tissuearea,j)
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n=len(trim(charvars(34)))
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call extCharToFloatNum(n,charvars(34),tissuemass,j)
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!
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n=len(trim(charvars(35)))
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call extCharToFloatNum(n,charvars(35),fo_fluoresce,j)
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n=len(trim(charvars(36)))
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call extCharToFloatNum(n,charvars(36),fm_fluoresce,j)
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n=len(trim(charvars(37)))
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call extCharToFloatNum(n,charvars(37),fs_fluoresce,j)
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n=len(trim(charvars(38)))
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call extCharToFloatNum(n,charvars(38),f_measlight,j)
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if(tissuearea.gt.0.0d0.and.tissuemass.gt.0.0d0)then
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!We assume the user requires mass-based calculations. We convert net photosynthesis,
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!transpiration, conductance and PAR from area basis to mass basis. All fitted parameters
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!are mass-based. However, mixing area- and mass- based calculations is not allowed.
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if(npoints(i).gt.0.and.isitmassbased(i).eq.0)then
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if(ierr(2).gt.0)then
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write(errorunit,*)'Input data error in ',trim(ACidata(i))
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write(errorunit,*)
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&'Please resubmit the data after correcting the following error:'
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ierr(2)=-ierr(2)
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endif
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write(errorunit,*)'Line starting with ',longchar(1:50)
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write(errorunit,*)'Check Column 33 or 34. Mixing area- and
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&mass-based measurements is not allowed'
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ierr(1)=1
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endif
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isitmassbased(i)=1
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!Convert PAR from umol/m2/s to umol/kg/s. tissuearea is in cm2 and tissuemass in in g
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PARi_umol=PARi_umol*tissuearea/(tissuemass*10.0d0)
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term=(H2OS_mmol-h2or)/(1000.0d0-H2OS_mmol)
|
|
transp_mmol=(flow/tissuemass)*term
|
|
term=co2r-CO2chamber_ppm*(1000.0d0-h2or)/(1000.0d0-H2OS_mmol)
|
|
PNcor_umol=(1.0d-3*flow/tissuemass)*term
|
|
H2OLeaf_mmol=esat(Tleaf_oC+273.15d0,Press_KPa*1000.0d0)/
|
|
&Press_KPa
|
|
!gtw is the conductance for water vapor between the water film and free air
|
|
gtw=transp_mmol*1.0d-3*(1.0d+3-(H2OLeaf_mmol+H2OS_mmol)/2.0d0)
|
|
&/(H2OLeaf_mmol-H2OS_mmol)
|
|
!we assume no stomatal conductance. We use the ratio of diffusivities of CO2 and water vapor in air (1.6),
|
|
!rather than the ratio of diffusivities of CO2 and water vapor in the boundary layer (1.37) as the latter applies
|
|
!to Pohlhausen analysis of mass transfer from a plate in laminar parallel flows which is probably not true
|
|
!for Sphagnum tissues.
|
|
gtc=gtw/1.6d0
|
|
!we set treat gtw as if it is stomatal conductance.
|
|
stom_COND_mol=gtw
|
|
CO2i_ppm=((gtc-1.0d-3*transp_mmol/2.0d0)*CO2chamber_ppm-
|
|
&PNcor_umol)/(gtc-1.0d-3*transp_mmol/2.0d0)
|
|
else
|
|
if(isitmassbased(i).ne.0)then
|
|
if(ierr(2).gt.0)then
|
|
write(errorunit,*)'Input data error in ',trim(ACidata(i))
|
|
write(errorunit,*)
|
|
&'Please resubmit the data after correcting the following error:'
|
|
ierr(2)=-ierr(2)
|
|
endif
|
|
write(errorunit,*)'Line starting with ',longchar(1:50)
|
|
write(errorunit,*)'Check Column 33 or 34. Mixing area- and
|
|
&mass-based measurements is not allowed'
|
|
ierr(1)=1
|
|
endif
|
|
endif
|
|
if(isitmassbased(i).eq.0)then
|
|
term=-100.0d0
|
|
term1=200.0d0
|
|
else
|
|
term=-9998.0d0
|
|
term1=1.0d+10
|
|
endif
|
|
if(PNcor_umol.lt.term.or.PNcor_umol.gt.term1)then
|
|
if(fm_fluoresce.le.0.0d0)then
|
|
if(ierr(2).gt.0)then
|
|
write(errorunit,*)'Input data error in ',trim(ACidata(i))
|
|
write(errorunit,*)
|
|
&'Please resubmit the data after correcting the following error:'
|
|
ierr(2)=-ierr(2)
|
|
endif
|
|
write(errorunit,*)'Line starting with ',longchar(1:50), '...
|
|
&is within the main data body but has no valid photosynthesis data'
|
|
if(dabs(PNcor_umol+9999.0d0).gt.1.d-6)then
|
|
write(errorunit,*)'Photosynthesis out of range:'
|
|
write(errorunit,*)PNcor_umol
|
|
endif
|
|
ierr(1)=1
|
|
endif
|
|
else
|
|
if(transp_mmol.gt.0.0d0.and.stom_COND_mol.gt.0.0d0
|
|
&.and.BLCond.gt.0.0d0)then
|
|
!use the corrected PN to calculate the Ci
|
|
!we assume BLCond already takes into account the stomatal ratio.
|
|
!for Missouri MOFLUX data, only 2004-2008 data need this correction
|
|
gtc=1.0d0/(1.6d0/stom_COND_mol+1.37d0/BLCond)
|
|
term=((gtc-transp_mmol*0.001d0/2.0d0)*CO2chamber_ppm
|
|
&-PNcor_umol)/(gtc+transp_mmol*0.001d0/2.0d0)
|
|
if(dabs(term-CO2i_ppm).gt.5.0d0)then
|
|
if(iwarning.eq.0)then
|
|
write(warningunit,*)'In file ',trim(sample(i))
|
|
write(warningunit,*)'Provided CO2i values do not agree with other
|
|
&input variables. Make sure input data are ok'
|
|
write(warningunit,*)'Original CO2i',',','Calculated CO2i'
|
|
iwarning=1
|
|
endif
|
|
write(warningunit,*)CO2i_ppm,',',term
|
|
endif
|
|
! CO2i_ppm=term
|
|
endif
|
|
endif
|
|
if(CO2i_ppm.le.0.0d0.or.CO2i_ppm.gt.10000.0d0)then
|
|
! if(ierr(2).gt.0)then
|
|
! write(errorunit,*)'Input data error in ',trim(ACidata(i))
|
|
! write(errorunit,*)
|
|
! &'Please resubmit the data after correcting the following error:'
|
|
! ierr(2)=-ierr(2)
|
|
! endif
|
|
! write(errorunit,*)'Intercellular CO2 (ppm) out of range'
|
|
! ierr(1)=1
|
|
if(fm_fluoresce.le.0.0d0)goto 20
|
|
endif
|
|
if(Tleaf_oC.lt.-50.0d0.or.Tleaf_oC.gt.100.0d0)then
|
|
if(fm_fluoresce.le.0.0d0)then
|
|
if(ierr(2).gt.0)then
|
|
write(errorunit,*)'Input data error in ',trim(ACidata(i))
|
|
write(errorunit,*)
|
|
&'Please resubmit the data after correcting the following error:'
|
|
ierr(2)=-ierr(2)
|
|
endif
|
|
write(errorunit,*)'Line starting with ',longchar(1:50), '...
|
|
&is within the main data body but has no valid leaf temperature'
|
|
write(errorunit,*)'Leaf temperature (oC) out of range'
|
|
ierr(1)=1
|
|
endif
|
|
endif
|
|
if(isitmassbased(i).eq.0)then
|
|
term1=1.0d+5
|
|
else
|
|
term1=1.0d+10
|
|
endif
|
|
if(PARi_umol.lt.-10.01d0.or.PARi_umol.gt.term1)then
|
|
if(ierr(2).gt.0)then
|
|
write(errorunit,*)'Input data error in ',trim(ACidata(i))
|
|
write(errorunit,*)
|
|
&'Please resubmit the data after correcting the following error:'
|
|
ierr(2)=-ierr(2)
|
|
endif
|
|
write(errorunit,*)'Line starting with ',longchar(1:50), '.....
|
|
&is within the main data body but has no valid PAR data'
|
|
write(errorunit,*)'Sample chamber PAR out of range'
|
|
ierr(1)=1
|
|
else
|
|
PARi_umol=dmax1(0.0d0,PARi_umol)
|
|
endif
|
|
if(Press_KPa.lt.50.0d0.or.Press_KPa.gt.150.0d0)then
|
|
Press_KPa=98.9d0
|
|
! if(ierr(2).gt.0)then
|
|
! write(errorunit,*)'Input data error in ',trim(ACidata(i))
|
|
! write(errorunit,*)
|
|
! &'Please resubmit the data after correcting the following error:'
|
|
! ierr(2)=-ierr(2)
|
|
! endif
|
|
! write(errorunit,*)'Air pressure out of range'
|
|
! ierr(1)=1
|
|
endif
|
|
if(Tair_oC.lt.-50.0d0.or.Tair_oC.gt.100.0d0)then
|
|
Tair_oC=Tleaf_oC
|
|
endif
|
|
if(vpdl_KPa.lt.0.0d0.or.vpdl_KPa.gt.1000.0d0)then
|
|
if(H2OS_mmol.gt.0.0d0)then
|
|
term=H2OS_mmol*0.001d0/(1.0d0+H2OS_mmol*0.001d0)
|
|
term=term*Press_KPa
|
|
vpdl_KPa=esat((Tleaf_oC+273.15d0),(Press_KPa*1000.0d0))
|
|
vpdl_KPa=vpdl_KPa*0.001d0-term
|
|
else
|
|
if(RH_S100.ge.0.0d0.and.RH_S100.le.100.0d0)then
|
|
term=0.01d0*RH_S100*
|
|
& esat((Tair_oC+273.15d0),(Press_KPa*1000.0d0))
|
|
vpdl_KPa=0.001d0*(
|
|
& esat((Tleaf_oC+273.15d0),(Press_KPa*1000.0d0))-term)
|
|
else
|
|
vpdl_KPa=1.6d0
|
|
endif
|
|
endif
|
|
endif
|
|
if(H2OS_mmol.lt.0.0d0)then
|
|
if(RH_S100.lt.0.0d0.or.RH_S100.gt.100.0d0)then
|
|
ambientvaporpres=esat((Tair_oC+273.15d0),
|
|
& (Press_KPa*1000.0d0))-vpdl_KPa*1000.0d0
|
|
ambientvaporpres=dmax1(0.0d0,ambientvaporpres)
|
|
else
|
|
ambientvaporpres=0.01d0*RH_S100*esat((Tair_oC+273.15d0),
|
|
& (Press_KPa*1000.0d0))
|
|
endif
|
|
else
|
|
ambientvaporpres=H2OS_mmol*0.001d0/(1.0d0+H2OS_mmol*0.001d0)
|
|
ambientvaporpres=ambientvaporpres*Press_KPa*1000.0d0
|
|
endif
|
|
npoints(i)=npoints(i)+1
|
|
pari(i,npoints(i))=PARi_umol
|
|
if(Tleaf_oC.gt.-50.0d0.and.Tleaf_oC.lt.100.0d0)then
|
|
templeaf(i,npoints(i))=Tleaf_oC+273.15d0
|
|
else
|
|
templeaf(i,npoints(i))=-9999.0d0
|
|
endif
|
|
pres_air(i,npoints(i))=Press_KPa*1000.0d0
|
|
yAnet(i,npoints(i))=PNcor_umol
|
|
if(oxygeni_KPa.le.0.0d0.or.oxygeni_KPa.ge.Press_KPa)then
|
|
po2i(i,npoints(i))=0.2095d0*pres_air(i,npoints(i))
|
|
else
|
|
po2i(i,npoints(i))=oxygeni_KPa*1000.0d0
|
|
endif
|
|
trmmol(i,npoints(i))=transp_mmol
|
|
gswmeas(i,npoints(i))=stom_COND_mol
|
|
vpdl(i,npoints(i))=vpdl_KPa*1000.0d0
|
|
if(Tair_oC.gt.-50.0d0.and.Tair_oC.lt.100.0d0)then
|
|
tempair(i,npoints(i))=Tair_oC+273.15d0
|
|
else
|
|
tempair(i,npoints(i))=-9999.0d0
|
|
endif
|
|
eambient(i,npoints(i))=ambientvaporpres
|
|
chlflphips2(i,npoints(i))=phips2
|
|
fo_pam(i,npoints(i))=fo_fluoresce
|
|
fm_pam(i,npoints(i))=fm_fluoresce
|
|
fs_pam(i,npoints(i))=fs_fluoresce
|
|
pam_measlight(i,npoints(i))=f_measlight
|
|
!the unit of CO2 is in umol/mol. We use both umol/mol and Pa. Li-Cor 6400
|
|
!measures CO2 on a moist air basis.
|
|
xpco2i_ppm(i,npoints(i))=CO2i_ppm
|
|
xpco2i(i,npoints(i))=CO2i_ppm*
|
|
& pres_air(i,npoints(i))*1.0d-6
|
|
if(CO2chamber_ppm.gt.0.0d0)then
|
|
co2a_ppm(i,npoints(i))=CO2chamber_ppm
|
|
pco2ambient(i,npoints(i))=CO2chamber_ppm*
|
|
& pres_air(i,npoints(i))*1.0d-6
|
|
else
|
|
pco2ambient(i,npoints(i))=-9999.0d0
|
|
co2a_ppm(i,npoints(i))=-9999.0d0
|
|
endif
|
|
CurveTypeID(i,npoints(i))=datumlimit
|
|
call CharToNumeric(chartime,term)
|
|
sampletime(i,npoints(i))=term
|
|
goto 20
|
|
100 do j=1,npoints(i)
|
|
vectorhorse(j)=sampletime(i,j)
|
|
call time_resolution(npoints(i),vectorhorse,
|
|
& avetimeresolution(i),avetimesampled(i))
|
|
enddo
|
|
630 close(spareunit)
|
|
goto 640
|
|
35 if(ierr(2).gt.0)then
|
|
write(errorunit,*)'Input data error in ',trim(ACidata(i))
|
|
write(errorunit,*)
|
|
&'Please resubmit the data after correcting the following error:'
|
|
ierr(2)=-ierr(2)
|
|
endif
|
|
write(errorunit,*)'This file has incorrect data format'
|
|
ierr(1)=1
|
|
close(spareunit)
|
|
goto 640
|
|
|
|
36 if(ierr(2).gt.0)then
|
|
write(errorunit,*)'Input data error in ',trim(ACidata(i))
|
|
write(errorunit,*)
|
|
&'Please resubmit the data after correcting the following error:'
|
|
ierr(2)=-ierr(2)
|
|
endif
|
|
write(errorunit,*)'This file has incorrect data format'
|
|
ierr(1)=1
|
|
close(dataunit,status='delete')
|
|
goto 640
|
|
|
|
40 if(ierr(2).gt.0)then
|
|
write(errorunit,*)'Input data error in ',trim(ACidata(i))
|
|
write(errorunit,*)
|
|
&'Please resubmit the data after correcting the following error:'
|
|
ierr(2)=-ierr(2)
|
|
endif
|
|
write(errorunit,*)'This file has incorrect data format'
|
|
ierr(1)=1
|
|
close(spareunit)
|
|
640 continue
|
|
10 enddo
|
|
if(ierr(1).eq.1)return
|
|
iprintheader(1)=1
|
|
do i=2,ntotfiles
|
|
if(isitmassbased(i).eq.isitmassbased(i-1))then
|
|
iprintheader(i)=0
|
|
else
|
|
iprintheader(i)=1
|
|
endif
|
|
enddo
|
|
k=1
|
|
do i=1,ntotfiles
|
|
if(k.eq.1.or.iprintheader(i).eq.1)then
|
|
call LeafGasPrintToFiles(isitmassbased(i:i),indexunit,
|
|
&ic3c4cam)
|
|
k=0
|
|
endif
|
|
if(npoints(i).lt.3)goto 1112
|
|
!-----------------------------------------------------
|
|
!detect A/Ci or light response curves with many points but no curve types are given
|
|
if(npoints(i).ge.7)then
|
|
j=0
|
|
do n=1,npoints(i)
|
|
if(CurveTypeID(i,n).gt.0)j=1
|
|
enddo
|
|
if(j.eq.0)then
|
|
call stdmaxmeanmin(npoints(i),pari(i:i,1:npoints(i)),
|
|
&stdpar,fmeanpar,xminpar,xmaxpar)
|
|
stdpar=100.0d0*(xmaxpar-xminpar)/fmeanpar
|
|
call stdmaxmeanmin(npoints(i),pco2ambient(i:i,1:npoints(i)),
|
|
&stdco2,fmeanco2,xminco2,xmaxco2)
|
|
stdco2=100.0d0*(xmaxco2-xminco2)/fmeanco2
|
|
if(stdpar.lt.5.0d0.and.stdco2.gt.5.0d0)then
|
|
!ACi curve
|
|
do n=1,npoints(i)
|
|
CurveTypeID(i,n)=11
|
|
enddo
|
|
else
|
|
if(stdpar.gt.5.0d0.and.stdco2.lt.5.0d0)then
|
|
!light response curve
|
|
do n=1,npoints(i)
|
|
CurveTypeID(i,n)=31
|
|
enddo
|
|
endif
|
|
endif
|
|
endif
|
|
endif
|
|
!------------------------------------------------------
|
|
if(ic3c4cam.eq.1)
|
|
&call SetUpLeafGasFit(curveno(i:i),sample(i:i),npoints(i:i),
|
|
&CurveTypeID(i:i,1:npoints(i)),yAnet(i:i,1:npoints(i)),
|
|
&xpco2i(i:i,1:npoints(i)),templeaf(i:i,1:npoints(i)),
|
|
&pari(i:i,1:npoints(i)),pres_air(i:i,1:npoints(i)),
|
|
&po2i(i:i,1:npoints(i)),chlflphips2(i:i,1:npoints(i)),
|
|
&pco2ambient(i:i,1:npoints(i)),trmmol(i:i,1:npoints(i)),
|
|
&gswmeas(i:i,1:npoints(i)),vpdl(i:i,1:npoints(i)),
|
|
&tempair(i:i,1:npoints(i)),eambient(i:i,1:npoints(i)),
|
|
&fo_pam(i:i,1:npoints(i)),fm_pam(i:i,1:npoints(i)),
|
|
&fs_pam(i:i,1:npoints(i)),pam_measlight(i:i,1:npoints(i)),
|
|
&stargamma25_usr(i:i),fkc25_usr(i:i),fko25_usr(i:i),
|
|
&rdlight25_usr(i:i),alpha25_usr(i:i),resistwp25_usr(i:i),
|
|
&resistch25_usr(i:i),isitmassbased(i:i),indexunit,
|
|
&siteID(i:i),Latitude(i:i),Longitude(i:i),Elevation(i:i),
|
|
&yearsampled(i:i),sampledoy(i:i),GrowingSeasonStart(i:i),
|
|
&GrowingSeasonEnd(i:i),standage(i:i),CanopyHeight(i:i),
|
|
&LeafAreaIndex(i:i),species(i:i),avetimeresolution(i:i),
|
|
&avetimesampled(i:i),SampleHeight(i:i),Needleage(i:i),
|
|
&specificLAI(i:i),nitrogencontent(i:i),carboncontent(i:i),
|
|
&phoscontent(i:i),woodporosity(i:i),sapwooddensity(i:i),
|
|
&leafratio(i:i))
|
|
if(ic3c4cam.eq.2)
|
|
&call C4SetUpLeafGasFit(curveno(i:i),sample(i:i),npoints(i:i),
|
|
&CurveTypeID(i:i,1:npoints(i)),yAnet(i:i,1:npoints(i)),
|
|
&xpco2i(i:i,1:npoints(i)),templeaf(i:i,1:npoints(i)),
|
|
&pari(i:i,1:npoints(i)),pres_air(i:i,1:npoints(i)),
|
|
&po2i(i:i,1:npoints(i)),chlflphips2(i:i,1:npoints(i)),
|
|
&pco2ambient(i:i,1:npoints(i)),trmmol(i:i,1:npoints(i)),
|
|
&gswmeas(i:i,1:npoints(i)),vpdl(i:i,1:npoints(i)),
|
|
&tempair(i:i,1:npoints(i)),eambient(i:i,1:npoints(i)),
|
|
&fo_pam(i:i,1:npoints(i)),fm_pam(i:i,1:npoints(i)),
|
|
&fs_pam(i:i,1:npoints(i)),pam_measlight(i:i,1:npoints(i)),
|
|
&stargamma25_usr(i:i),fkc25_usr(i:i),fko25_usr(i:i),
|
|
&rdlight25_usr(i:i),alpha25_usr(i:i),resistwp25_usr(i:i),
|
|
&resistch25_usr(i:i),isitmassbased(i:i),indexunit,
|
|
&siteID(i:i),Latitude(i:i),Longitude(i:i),Elevation(i:i),
|
|
&yearsampled(i:i),sampledoy(i:i),GrowingSeasonStart(i:i),
|
|
&GrowingSeasonEnd(i:i),standage(i:i),CanopyHeight(i:i),
|
|
&LeafAreaIndex(i:i),species(i:i),avetimeresolution(i:i),
|
|
&avetimesampled(i:i),SampleHeight(i:i),Needleage(i:i),
|
|
&specificLAI(i:i),nitrogencontent(i:i),carboncontent(i:i),
|
|
&phoscontent(i:i),woodporosity(i:i),sapwooddensity(i:i),
|
|
&leafratio(i:i))
|
|
1112 continue
|
|
enddo
|
|
return
|
|
300 format(a50000)
|
|
310 format(a5000)
|
|
340 format(a)
|
|
end subroutine ToLeafGasOptimization
|
|
!&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&&
|