365 lines
14 KiB
FortranFixed
365 lines
14 KiB
FortranFixed
!Photosynthetic, Internal and Stomatal Conductance Analyses of Leaves (PISCAL)
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!
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!Created by: Lianhong Gu
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! Environmental Sciences Dvision
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! Oak Ridge National Laboratory
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! Oak Ridge, TN 37831
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! lianhong-gu@ornl.gov
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!with support from Department of Energy Office of Science, Biological
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!and Environmental Research Program
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!
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!PISCAL first created 10 July 2008
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!Paralle PISCAL 20 Feb 2013
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!()()()()()()()()()()()()()()()()()()()()()()()()()()()()()()
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program main
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implicit none
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include 'mpif.h'
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integer dataunit,spareunit,ierr(2),runvalues(8),ipos1,ipos2,
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&ntotfiles,noutputfiles,i,j,k,rank_mpi,numproc_mpi,numproc,
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&ierror_mpi,nshare,nmod,npartfiles,istartno,iendno,indexunit(20),
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&numchar,needheader(20),rootprocess
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character rundate*8,runtime*10,runzone*5,longchar*5000,achar*5,
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&longchar1*5000
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character*100 datapath,outpath,storein,storeout,ACidata(8000)
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character*50 AllACiFiles,outputfile(20)
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! Set input / output directory
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parameter(
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& datapath=
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! &'/home/l2g/ngeetropics/gamboa/curves/',
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! &'/home/l2g/ngeetropics/metropolitano/curves/',
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! &'/home/l2g/ngeetropics/fortsherman/curves/',
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! & '/home/l2g/ngeetropics/kelsey/curves/',
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! & '/home/l2g/leafres/hybriddata/Berner/',
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& '/home/l2g/SingleLeafModel/ACiSimulation/hybrid/',
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! &'/home/l2g/leafweb/data/dweston/Sphagnum_leafweb_Oct2015/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/wenting/',
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! &'/home/l2g/leafres/hybriddata/dwestonpoplus/data_Pn_tree_1_195_v2/
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! &',
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! &'/home/l2g/leafres/hybriddata/dwestonpoplus/data3/',
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! &'/home/l2g/leafres/hybriddata/cernusak/2014data/',
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! & '/home/l2g/dataassim/leaf/data/moflux/2008/inputs/',
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! & '/home/l2g/leafres/hybriddata/sphagnum/2014data1/',
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!for moflux data, 2004-2008 requires correction of Ci. Other years do not
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! & '/home/l2g/dataassim/leaf/data/LawData/inputs/',
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! & '/home/l2g/dataassim/leaf/data/dweston/inputs/',
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! & '/home/l2g/dataassim/leaf/data/johnbaker/inputs/',
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! & '/home/l2g/dataassim/leaf/data/martins/inputs/',
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! & '/home/l2g/dataassim/leaf/data/benzi/inputs/',
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! & '/home/l2g/dataassim/leaf/data/loos/inputs/',
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! & '/home/l2g/dataassim/leaf/data/ellsworth/inputs/',
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! & '/home/l2g/dataassim/leaf/data/fromleafweb/inputs/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/testkco/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/rwprch/',
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! & '/home/l2g/dataassim/leaf/data/panama/sept2012/inputs/',
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! &'/home/l2g/dataassim/leaf/data/williams/inputs/',
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! & '/home/l2g/dataassim/leaf/test/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/Martins/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/collantes/',
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! & '/home/l2g/dataassim/leaf/data/dweston/inputs/',
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! & '/home/l2g/GEMSiS/curves/',
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& outpath=
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! &'/home/l2g/ngeetropics/gamboa/results/',
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! &'/home/l2g/ngeetropics/metropolitano/results/',
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! &'/home/l2g/ngeetropics/fortsherman/',
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! &'/home/l2g/ngeetropics/kelsey/results/',
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! & '/home/l2g/leafres/hybriddata/Berner/',
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& '/home/l2g/SingleLeafModel/ACiSimulation/hybrid/',
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! &'/home/l2g/leafweb/data/dweston/Sphagnum_leafweb_Oct2015/',
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! &'/home/l2g/leafres/hybriddata/cernusak/2014data/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/wenting/',
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! &'/home/l2g/leafres/hybriddata/dwestonpoplus/data3/',
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! &'/home/l2g/leafres/hybriddata/dwestonpoplus/data_Pn_tree_1_195_v2/
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! &',
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! & '/home/l2g/dataassim/leaf/data/moflux/2008/outputs/',
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! & '/home/l2g/dataassim/leaf/data/moflux/2012/outputs/',
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! & '/home/l2g/dataassim/leaf/data/LawData/outputs/',
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! & '/home/l2g/dataassim/leaf/data/dweston/outputs/',
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! & '/home/l2g/dataassim/leaf/data/johnbaker/outputs/',
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! & '/home/l2g/dataassim/leaf/data/martins/outputs/',
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! & '/home/l2g/dataassim/leaf/data/benzi/outputs/',
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! & '/home/l2g/dataassim/leaf/data/loos/outputs/',
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! & '/home/l2g/dataassim/leaf/data/ellsworth/outputs/',
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! &'/home/l2g/leafres/hybriddata/sphagnum/2014results1/',
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! &'/home/l2g/junk/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/testkco/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/rwprch/results/',
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! & '/home/l2g/dataassim/leaf/data/panama/sept2012/outputs/',
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! &'/home/l2g/dataassim/leaf/data/panama/sept2012/outputs/rwprch/',
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! & '/home/l2g/mpitest/',
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! &'/home/l2g/dataassim/leaf/data/williams/outputs/',
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! & '/home/l2g/dataassim/leaf/data/fromleafweb/outputs/withpad/',
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! & '/home/l2g/dataassim/leaf/test/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/collantes/',
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! & '/home/l2g/SingleLeafModel/ACiSimulation/Martins/',
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! & '/home/l2g/dataassim/leaf/data/dweston/outputs/',
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! & '/home/l2g/GEMSiS/results/',
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! &storein='/home/l2g/leafweb/users/curves/',
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! &storeout='/home/l2g/leafweb/users/results/',
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&storein='/home/l2g/clm/results/',
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&storeout='/home/l2g/clm/results/',
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! &storein='/home/l2g/junk/',
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! &storeout='/home/l2g/junk/',
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! &storein='/home/l2g/dataassim/leaf/data/ellsworth/outputs/',
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! &storeout='/home/l2g/dataassim/leaf/data/ellsworth/outputs/',
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& AllACiFiles='AllLeafGasFiles')
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!---------------End of variable declaration----------------
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rootprocess=0
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dataunit=1
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spareunit=3
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! if(rank_mpi.ne.rootprocess)goto 25
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!read A/Ci curve names stored in AllACiFiles
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open(unit=2,file=trim(datapath)//trim(AllACiFiles))
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ntotfiles=1
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10 read(2,fmt=300,end=20)longchar
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i=len(longchar)
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j=0
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15 j=j+1
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if(longchar(j:j).ne.''.or.longchar(j:j).ne.' ')then
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ipos1=j
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else
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if(j.ge.i)goto 10
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goto 15
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endif
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j=i+1
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16 j=j-1
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if(longchar(j:j).ne.''.or.longchar(j:j).ne.' ')then
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ipos2=j
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else
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if(j.le.1)goto 10
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goto 16
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endif
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ACidata(ntotfiles)=longchar(ipos1:ipos2)
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ntotfiles=ntotfiles+1
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goto 10
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20 ntotfiles=ntotfiles-1
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close(2)
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outputfile(1)='leafgasparameters.csv'
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outputfile(2)='leafgascomparison.csv'
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outputfile(3)='stomwuecicaparameters.csv'
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outputfile(4)='stomcomparison.csv'
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outputfile(5)='wuecicacomparison.csv'
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outputfile(6)='fluorescencefit.csv'
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outputfile(7)='fluoresparameters.csv'
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outputfile(8)='aciempfitparameters.csv'
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outputfile(9)='alightempfitparameters.csv'
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outputfile(10)='warningmessage'
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outputfile(11)='errormessage'
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noutputfiles=11
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!10 to 20 are used for file units for output files
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do i=1,noutputfiles
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indexunit(i)=i+9
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enddo
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call MPI_INIT(ierror_mpi)
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call MPI_COMM_RANK(MPI_COMM_WORLD,rank_mpi,ierror_mpi)
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call MPI_COMM_SIZE(MPI_COMM_WORLD,numproc,ierror_mpi)
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!25 continue
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! call MPI_BCAST(ACidata,ntotfiles,MPI_CHARACTER,rootprocess,
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! &MPI_COMM_WORLD,ierror_mpi)
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! call MPI_BCAST(ntotfiles,1,MPI_INTEGER,rootprocess,
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! &MPI_COMM_WORLD,ierror_mpi)
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! call MPI_BCAST(outputfile,noutputfiles,MPI_CHARACTER,rootprocess,
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! &MPI_COMM_WORLD,ierror_mpi)
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! call MPI_BCAST(indexunit,noutputfiles,MPI_INTEGER,rootprocess,
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! &MPI_COMM_WORLD,ierror_mpi)
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! call MPI_BCAST(noutputfiles,1,MPI_INTEGER,rootprocess,
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! &MPI_COMM_WORLD,ierror_mpi)
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!make sure the number of processors actually needed not to exceed the number of curves
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numproc_mpi=min0(ntotfiles,numproc)
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!only processors with ranks 0,1,.......numproc_mpi-1 actually do work and the rest
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!go idle
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if(rank_mpi.ge.numproc_mpi)goto 45
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nshare=ntotfiles/numproc_mpi
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nmod=ntotfiles-nshare*numproc_mpi
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if((rank_mpi+1).le.nmod)then
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npartfiles=nshare+1
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istartno=rank_mpi*npartfiles+1
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iendno=(rank_mpi+1)*npartfiles
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else
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npartfiles=nshare
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istartno=nmod*(nshare+1)+(rank_mpi+1-nmod-1)*nshare+1
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iendno=istartno+nshare-1
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endif
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numchar=1
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30 if(rank_mpi.lt.(10**numchar))goto 40
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numchar=numchar+1
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goto 30
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40 call NumberToChar(rank_mpi,numchar,achar)
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do i=1,noutputfiles-1
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open(unit=indexunit(i),
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&file=trim(outpath)//trim(outputfile(i))//trim(achar))
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enddo
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call ToLeafGasOptimization(npartfiles,ACidata(istartno:iendno),
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&dataunit,spareunit,datapath,indexunit,ierr)
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do i=1,noutputfiles-1
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close(indexunit(i))
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enddo
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if(ierr(1).ne.0)then
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i=indexunit(noutputfiles)
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open(unit=i,
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&file=trim(outpath)//trim(outputfile(noutputfiles))//trim(achar))
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write(i,*)'Input data error in ',ACidata(ierr(2)+istartno-1)
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write(i,*)
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&'Please resubmit the data after correcting the following error:'
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if(ierr(1).eq.1)then
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write(i,*)'Photosynthesis (umol/m2/s) out of range'
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endif
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if(ierr(1).eq.2)then
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write(i,*)'Intercellular CO2(ppm) out of range'
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endif
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if(ierr(1).eq.3)then
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write(i,*)'Leaf temperature (oC) out of range'
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endif
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if(ierr(1).eq.4)then
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write(i,*)'Chamber PAR (umol/m2/s) out of range'
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endif
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if(ierr(1).eq.5)then
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write(i,*)'Atmospheric pressure (Pa) out of range'
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endif
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if(ierr(1).eq.13)then
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write(i,*)'Check line 13 for data entry error'
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endif
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if(ierr(1).eq.14)then
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write(i,*)'Specified chloroplastic CO2 compensation point',
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&'(Pa) out of range'
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endif
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if(ierr(1).eq.15)then
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write(i,*)'Specified Michaelis-Menten constant for the',
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&'carboxylase (Kc) out of range'
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endif
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if(ierr(1).eq.16)then
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write(i,*)'Specified Michaelis-Menten constant for the',
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&'oxygenase (Ko) out of range'
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endif
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if(ierr(1).eq.17)then
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write(i,*)'Specified fraction of nonreturned glycolate',
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&'carbon(alpha) out of range 0~1'
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endif
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if(ierr(1).eq.18)then
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write(i,*)'Specified dark respiration rate Rd out of range >0'
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endif
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if(ierr(1).eq.19)then
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write(i,*)'Specified mesophyll) resistance rch or rwp out of',
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&'of range >0'
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endif
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if(ierr(1).eq.34)then
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write(i,*)'Check Column 33 or 34. Mixing area- and mass-based
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&measurements is not allowed'
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endif
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if(ierr(1).eq.36)then
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write(i,*)'Check line 16 for data entry error'
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endif
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if(ierr(1).eq.39)then
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write(i,*)
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&'Check the main body of data for data entry error, starting from
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&line 19'
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endif
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if(ierr(1).eq.40)then
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write(i,*)
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&'Data file format cannot be recognized'
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endif
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close(i)
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endif
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!make sure everyone is done before wrapping up.
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45 call MPI_BARRIER(MPI_COMM_WORLD,ierror_mpi)
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if(rank_mpi.eq.rootprocess)then
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do j=1,noutputfiles
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open(unit=indexunit(j),file=
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&trim(outpath)//trim(outputfile(j)))
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needheader(j)=0
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enddo
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!needheader=0: the two headerlines as well as data have not been written yet
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!needheader=1: the two headerlines but no data have been written
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!needheader=2: the two headerlines and data have been written
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do i=1,numproc_mpi
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rank_mpi=i-1
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numchar=1
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50 if(rank_mpi.lt.(10**numchar))goto 60
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numchar=numchar+1
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goto 50
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60 call NumberToChar(rank_mpi,numchar,achar)
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do j=1,noutputfiles-2
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k=0
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open(unit=2,file=
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&trim(outpath)//trim(outputfile(j))//trim(achar))
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if(needheader(j).eq.1.or.needheader(j).eq.2)then
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read(2,*,end=70)
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read(2,*,end=70)
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else
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read(2,fmt=300,end=70)longchar
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read(2,fmt=300,end=70)longchar1
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write(indexunit(j),310)trim(longchar)
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write(indexunit(j),310)trim(longchar1)
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needheader(j)=1
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endif
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65 read(2,fmt=300,end=70)longchar
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write(indexunit(j),310)trim(longchar)
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needheader(j)=2
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k=1
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goto 65
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70 close(2,status='delete')
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enddo
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do j=noutputfiles-1,noutputfiles
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open(unit=2,file=
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&trim(outpath)//trim(outputfile(j))//trim(achar))
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75 read(2,fmt=300,end=80)longchar
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write(indexunit(j),310)trim(longchar)
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needheader(j)=2
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goto 75
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80 close(2,status='delete')
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enddo
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enddo
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do j=1,noutputfiles
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if(needheader(j).eq.2)then
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!keep files that contain data
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close(indexunit(j))
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else
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!delete files that contain no data
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close(indexunit(j),status='delete')
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endif
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enddo
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!----------------------------------------------------------
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!intercept the data
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goto 450
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399 call date_and_time(rundate,runtime,runzone,runvalues)
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do i=1,ntotfiles
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open(unit=1,file=trim(datapath)//trim(ACidata(i)))
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open(unit=2,file=
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&trim(storein)//rundate//runtime(1:6)//trim(ACidata(i)))
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400 read(1,fmt=300,end=410)longchar
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write(2,310)trim(longchar)
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goto 400
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410 close(1)
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close(2)
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enddo
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do i=1,6
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k=0
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open(unit=1,file=trim(outpath)//trim(outputfile(i)))
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open(unit=2,file=
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&trim(storeout)//rundate//runtime(1:6)//trim(outputfile(i)))
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420 read(1,fmt=300,end=430)longchar
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write(2,310)trim(longchar)
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k=1
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goto 420
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430 if(k.eq.1)then
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close(1)
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close(2)
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else
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close(1,status='delete')
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close(2,status='delete')
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endif
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enddo
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endif
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450 call MPI_FINALIZE(ierror_mpi)
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!----------------------------------------------------------
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300 format(a5000)
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310 format(a)
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end
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!@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
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