./ # the working directory for Piscal processing ./piscal.cfg # Piscal configuration - first line has Photosynthetic Pathway type # followed by a list of all files in ./input # C3_photosynthesis_leafweb, C4_photosynthesis_leafweb # CAM_photosynthesis_leafweb ./piscal.err # Contains any stderr output from launching Piscal, should be empty # unless there is a problem with the system or executable ./piscal.pid # file containing one line - the process ID which Piscal # is running under. this is used to check if Piscal is currently # executing or if it has completed ./input/ # directory containing all unprocessed LeafInput files ./input/Wild_Capsicum1.csv # example input copied from LeafWeb ./input/Wild_Capsicum2.csv # "" ./output/ # directory piscal creates to store all output ./output/clninput/ # directory containing cleaned leaf input, for the purpose # of making that data available for search in LeafWeb ./output/clninput/20160311152630Wild_Capsicum1.csv # example cleaned input ./output/clninput/20160311152630Wild_Capsicum2.csv # "" ./output/fitresult/ # directory containing fitresult generated by Piscal ./output/fitresult/touser/ # output results sent to user and to storage ./output/fitresult/touser/cntrlbestparameters.csv # example output ./output/fitresult/touser/errormessage # file containing any error # messages processed by Piscal ./output/fitresult/touser/warningmessage # file containing any warning # messages processed by Piscal ./output/fitresult/nottouser/ # Output results sent to storage only