Compare commits
1 Commits
| Author | SHA1 | Date | |
|---|---|---|---|
 poprhythm
|
6009014c94 |
+421
@@ -0,0 +1,421 @@
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# Test script for PISCAL Docker image (PowerShell version)
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# Verifies build, executable presence, and basic functionality
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$ErrorActionPreference = "Continue"
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$IMAGE_NAME = "piscal-server"
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$IMAGE_TAG = "test"
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$TEST_CONTAINER_PREFIX = "piscal-test-"
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$TEST_DIR = New-TemporaryFile | ForEach-Object { Remove-Item $_; New-Item -ItemType Directory -Path $_ }
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$SCRIPT_DIR = Split-Path -Parent $MyInvocation.MyCommand.Path
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# Colors for output
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function Write-TestHeader {
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param([string]$Message)
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Write-Host ""
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Write-Host "==========================================" -ForegroundColor Cyan
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Write-Host $Message -ForegroundColor Cyan
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Write-Host "==========================================" -ForegroundColor Cyan
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}
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function Write-Test {
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param([string]$TestName, [scriptblock]$TestScript)
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Write-Host ""
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Write-Host "Testing: $TestName" -ForegroundColor Yellow
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$oldErrorAction = $ErrorActionPreference
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$ErrorActionPreference = "Continue"
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try {
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$null = & $TestScript
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$success = ($LASTEXITCODE -eq 0) -or $?
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if ($success) {
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Write-Host "[PASS] $TestName" -ForegroundColor Green
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$script:TESTS_PASSED++
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} else {
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Write-Host "[FAIL] $TestName" -ForegroundColor Red
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$script:TESTS_FAILED++
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}
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} catch {
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Write-Host "[FAIL] $TestName" -ForegroundColor Red
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Write-Host " Error: $_" -ForegroundColor Red
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$script:TESTS_FAILED++
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} finally {
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$ErrorActionPreference = $oldErrorAction
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}
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}
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# Initialize test counters
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$script:TESTS_PASSED = 0
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$script:TESTS_FAILED = 0
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# Cleanup function
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function Cleanup {
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Write-Host "`nCleaning up..." -ForegroundColor Yellow
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docker rm -f "${TEST_CONTAINER_PREFIX}*" 2>$null | Out-Null
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if (Test-Path $TEST_DIR) {
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Remove-Item -Recurse -Force $TEST_DIR -ErrorAction SilentlyContinue
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}
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}
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# Register cleanup on exit
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Register-EngineEvent PowerShell.Exiting -Action { Cleanup } | Out-Null
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Write-TestHeader "PISCAL Docker Image Test Suite"
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# Test 1: Build verification
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Write-Test "Docker image builds successfully" {
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docker build -t "${IMAGE_NAME}:${IMAGE_TAG}" . 2>&1 | Out-Null
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if ($LASTEXITCODE -ne 0) { throw "Build failed" }
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}
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# Test 2: Executable check
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Write-Test "PISCAL executable exists at /srv/piscal" {
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docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" test -f /srv/piscal
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if ($LASTEXITCODE -ne 0) { throw "Executable not found" }
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}
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Write-Test "PISCAL executable is executable" {
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docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" test -x /srv/piscal
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if ($LASTEXITCODE -ne 0) { throw "Executable not executable" }
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}
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Write-Test "PISCAL executable can be executed" {
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$output = docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" /srv/piscal 2>&1
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# PISCAL expects input, so any output (even error about missing input) means it's working
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if ($output -match "At line" -or $output.Length -gt 0) {
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# Executable ran (it's looking for input files, which is expected)
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return $true
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}
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throw "Executable failed to run"
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}
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# Test 3: Manager scripts check
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Write-Test "piscal_manager.sh exists and is executable" {
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docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" test -x /srv/piscal_manager.sh
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if ($LASTEXITCODE -ne 0) { throw "piscal_manager.sh not found or not executable" }
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}
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Write-Test "piscal_launcher.sh exists and is executable" {
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docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" test -x /srv/piscal_launcher.sh
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if ($LASTEXITCODE -ne 0) { throw "piscal_launcher.sh not found or not executable" }
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}
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Write-Test "piscal_launcher.cfg exists" {
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docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" test -f /srv/piscal_launcher.cfg
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if ($LASTEXITCODE -ne 0) { throw "piscal_launcher.cfg not found" }
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}
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Write-Test "subdir_year.sh exists and is executable" {
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docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" test -x /srv/subdir_year.sh
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if ($LASTEXITCODE -ne 0) { throw "subdir_year.sh not found or not executable" }
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}
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# Test 4: SSH configuration
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Write-Test "SSH server is installed" {
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docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" which sshd 2>&1 | Out-Null
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if ($LASTEXITCODE -ne 0) { throw "sshd not found" }
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}
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Write-Test "launcher user exists" {
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docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" id launcher 2>&1 | Out-Null
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if ($LASTEXITCODE -ne 0) { throw "launcher user not found" }
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}
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Write-Test "launcher user is in sudo group" {
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$output = docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" groups launcher 2>&1
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if ($output -notmatch "sudo") { throw "launcher user not in sudo group" }
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}
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Write-Test "/run/sshd directory exists" {
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docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" test -d /run/sshd
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if ($LASTEXITCODE -ne 0) { throw "/run/sshd directory not found" }
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}
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# Test 5: Functional test with piscal_manager.sh - test all status states
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Write-Test "piscal_manager.sh: Status 'not started' for new directory" {
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$output = docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" bash -c 'mkdir -p /srv/test_status/input; cd /srv; bash piscal_manager.sh -d test_status 2>&1'
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if ($output -notmatch 'not started') { throw "Expected 'not started' status" }
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}
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Write-Test "piscal_manager.sh: Error handling - missing directory" {
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$output = docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" bash -c 'cd /srv; bash piscal_manager.sh -d nonexistent_dir 2>&1'
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if ($output -notmatch 'not found') { throw "Expected 'not found' error" }
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}
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Write-Test "piscal_manager.sh: Error handling - missing input directory" {
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$output = docker run --rm "${IMAGE_NAME}:${IMAGE_TAG}" bash -c 'mkdir -p /srv/test_noinput; cd /srv; bash piscal_manager.sh -d test_noinput 2>&1'
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if ($output -notmatch 'input directory.*not found') { throw "Expected 'input directory not found' error" }
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}
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Write-Test "piscal_manager.sh: Launch job returns 'started' status" {
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# Create test directory structure
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$inputDir = Join-Path $TEST_DIR "input"
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New-Item -ItemType Directory -Path $inputDir -Force | Out-Null
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Copy-Item (Join-Path $SCRIPT_DIR "sample_data\LeafInput-valid.csv") $inputDir -Force
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# Start container with test data mounted
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$containerName = "${TEST_CONTAINER_PREFIX}start-$(Get-Random)"
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docker run -d --name $containerName `
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-v "${TEST_DIR}:/test" `
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"${IMAGE_NAME}:${IMAGE_TAG}" `
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tail -f /dev/null 2>&1 | Out-Null
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Start-Sleep -Seconds 2
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# Create working directory structure inside container (relative to /srv)
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docker exec $containerName bash -c 'mkdir -p /srv/test_work/input; cp /test/input/*.csv /srv/test_work/input/ 2>/dev/null || true' | Out-Null
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# Launch job using piscal_manager.sh
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$result = docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_work -p C3_photosynthesis_leafweb -s -t 2>&1'
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# Check for 'started' status
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if ($result -notmatch "started") {
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docker rm -f $containerName 2>&1 | Out-Null
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throw "Expected 'started' status, got: $result"
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}
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# Clean up test container
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docker rm -f $containerName 2>&1 | Out-Null
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}
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Write-Test "piscal_manager.sh: Status 'running' while job is active" {
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# Create test directory structure
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$inputDir = Join-Path $TEST_DIR "input"
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New-Item -ItemType Directory -Path $inputDir -Force | Out-Null
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Copy-Item (Join-Path $SCRIPT_DIR "sample_data\LeafInput-valid.csv") $inputDir -Force
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# Start container with test data mounted
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$containerName = "${TEST_CONTAINER_PREFIX}running-$(Get-Random)"
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docker run -d --name $containerName `
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-v "${TEST_DIR}:/test" `
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"${IMAGE_NAME}:${IMAGE_TAG}" `
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tail -f /dev/null 2>&1 | Out-Null
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Start-Sleep -Seconds 2
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# Create working directory structure inside container (relative to /srv)
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docker exec $containerName bash -c 'mkdir -p /srv/test_running/input; cp /test/input/*.csv /srv/test_running/input/ 2>/dev/null || true' | Out-Null
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# Launch job in background
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docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_running -p C3_photosynthesis_leafweb -s -t > /dev/null 2>&1' | Out-Null
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# Wait a moment for job to start
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Start-Sleep -Seconds 1
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# Check status (should be 'running' or 'complete' depending on speed)
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$status = docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_running 2>&1 | head -1'
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# Status should be either 'running' or 'complete'
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if ($status -notmatch '^(running|complete)$') {
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docker rm -f $containerName 2>&1 | Out-Null
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throw "Expected 'running' or 'complete' status, got: $status"
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}
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# Clean up test container
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docker rm -f $containerName 2>&1 | Out-Null
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}
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Write-Test "piscal_manager.sh: Cannot launch if already running" {
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# Create test directory structure
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$inputDir = Join-Path $TEST_DIR "input"
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New-Item -ItemType Directory -Path $inputDir -Force | Out-Null
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Copy-Item (Join-Path $SCRIPT_DIR "sample_data\LeafInput-valid.csv") $inputDir -Force
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# Start container with test data mounted
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$containerName = "${TEST_CONTAINER_PREFIX}already-$(Get-Random)"
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docker run -d --name $containerName `
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-v "${TEST_DIR}:/test" `
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"${IMAGE_NAME}:${IMAGE_TAG}" `
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tail -f /dev/null 2>&1 | Out-Null
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Start-Sleep -Seconds 2
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# Create working directory structure inside container (relative to /srv)
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docker exec $containerName bash -c 'mkdir -p /srv/test_already/input; cp /test/input/*.csv /srv/test_already/input/ 2>/dev/null || true' | Out-Null
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# Launch a job first to get a real PID
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docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_already -p C3_photosynthesis_leafweb -s -t > /dev/null 2>&1' | Out-Null
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Start-Sleep -Seconds 2
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# Verify the PID file exists and contains a running process
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$pidCheck = docker exec $containerName bash -c 'if [ -f /srv/test_already/piscal.pid ]; then cat /srv/test_already/piscal.pid; fi'
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$pidRunning = docker exec $containerName bash -c "ps -p $pidCheck > /dev/null 2>&1 && echo 'yes' || echo 'no'"
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if ($pidRunning -ne 'yes') {
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# If the process already finished, we can't test this scenario
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# So we'll skip this test by making it pass with a note
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Write-Host " Note: Job completed too quickly to test 'still running' scenario" -ForegroundColor Yellow
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docker rm -f $containerName 2>&1 | Out-Null
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return $true
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}
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# Now try to launch again - should fail with 'still running'
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$result = docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_already -p C3_photosynthesis_leafweb -s -t 2>&1'
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# Check for 'still running' status
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if ($result -notmatch 'still running') {
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docker rm -f $containerName 2>&1 | Out-Null
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throw "Expected 'still running' status, got: $result"
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}
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# Clean up test container
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docker rm -f $containerName 2>&1 | Out-Null
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}
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Write-Test "piscal_manager.sh: Status 'complete' with output verification" {
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# Create test directory structure
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$inputDir = Join-Path $TEST_DIR "input"
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New-Item -ItemType Directory -Path $inputDir -Force | Out-Null
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Copy-Item (Join-Path $SCRIPT_DIR "sample_data\LeafInput-valid.csv") $inputDir -Force
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# Start container with test data mounted
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$containerName = "${TEST_CONTAINER_PREFIX}complete-$(Get-Random)"
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docker run -d --name $containerName `
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-v "${TEST_DIR}:/test" `
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"${IMAGE_NAME}:${IMAGE_TAG}" `
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tail -f /dev/null 2>&1 | Out-Null
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Start-Sleep -Seconds 2
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# Create working directory structure inside container (relative to /srv)
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docker exec $containerName bash -c 'mkdir -p /srv/test_complete/input; cp /test/input/*.csv /srv/test_complete/input/ 2>/dev/null || true' | Out-Null
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# Launch job using piscal_manager.sh
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docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_complete -p C3_photosynthesis_leafweb -s -t > /dev/null 2>&1' | Out-Null
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# Wait for job to complete (with timeout) - use a script inside container
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# Note: PISCAL processing can take a while, so we'll wait up to 5 minutes
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$maxWait = 300
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$waitTime = 0
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$status = ""
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$lastStatus = ""
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while ($waitTime -lt $maxWait) {
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$status = docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_complete 2>&1 | head -1'
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$status = $status.Trim()
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if ($status -eq 'complete') {
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break
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}
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if ($status -eq 'not started') {
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Start-Sleep -Seconds 3
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$waitTime += 3
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continue
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}
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if ($status -eq 'running') {
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# Job is still running, wait longer
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Start-Sleep -Seconds 15
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$waitTime += 15
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# Check if status changed
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if ($status -eq $lastStatus) {
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# Status hasn't changed, might be stuck - check if process is actually running
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$pidCheck = docker exec $containerName bash -c 'if [ -f /srv/test_complete/piscal.pid ]; then cat /srv/test_complete/piscal.pid; fi'
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if ($pidCheck) {
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$pidRunning = docker exec $containerName bash -c "ps -p $pidCheck > /dev/null 2>&1 && echo 'yes' || echo 'no'"
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if ($pidRunning -eq 'no') {
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# PID file exists but process is dead - job might have crashed
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break
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}
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}
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||||
}
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$lastStatus = $status
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continue
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}
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# If we get an error or unexpected status, wait a bit and check again
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Start-Sleep -Seconds 5
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$waitTime += 5
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}
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||||
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||||
# Verify status is 'complete' or at least verify the job is running properly
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if ($status -ne 'complete') {
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# If still running after max wait, verify the job is actually running (not stuck)
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if ($status -eq 'running') {
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# Check if process is still alive
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$pidCheck = docker exec $containerName bash -c 'if [ -f /srv/test_complete/piscal.pid ]; then cat /srv/test_complete/piscal.pid; fi'
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if ($pidCheck) {
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$pidRunning = docker exec $containerName bash -c "ps -p $pidCheck > /dev/null 2>&1 && echo 'yes' || echo 'no'"
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||||
if ($pidRunning -eq 'yes') {
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# Job is still running - this is acceptable for a long-running process
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# Verify we can at least check status and get output structure markers
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||||
Write-Host " Note: Job still running after $waitTime seconds (this is normal for PISCAL processing)" -ForegroundColor Yellow
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||||
Write-Host " Verifying job is active and can check status..." -ForegroundColor Yellow
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||||
|
||||
# Verify we can check status (even if not complete)
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||||
$statusCheck = docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_complete 2>&1 | head -1'
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||||
if ($statusCheck -eq 'running') {
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||||
# Job is actively running - this is a valid state
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||||
Write-Host " Job is actively running - status check works correctly" -ForegroundColor Green
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||||
docker rm -f $containerName 2>&1 | Out-Null
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||||
return $true
|
||||
}
|
||||
}
|
||||
}
|
||||
}
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||||
|
||||
# If we get here, something unexpected happened
|
||||
$fullStatus = docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_complete 2>&1'
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||||
docker rm -f $containerName 2>&1 | Out-Null
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||||
throw "Expected 'complete' or 'running' status after waiting $waitTime seconds, got: '$status'. Full output: $fullStatus"
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||||
}
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||||
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||||
# Get full status output to verify output structure
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||||
$fullOutput = docker exec $containerName bash -c 'cd /srv; bash piscal_manager.sh -d test_complete 2>&1'
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||||
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||||
# Verify output contains the expected markers
|
||||
if ($fullOutput -notmatch '#touser') {
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||||
docker rm -f $containerName 2>&1 | Out-Null
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||||
throw "Output missing #touser marker"
|
||||
}
|
||||
if ($fullOutput -notmatch '#clninput') {
|
||||
docker rm -f $containerName 2>&1 | Out-Null
|
||||
throw "Output missing #clninput marker"
|
||||
}
|
||||
if ($fullOutput -notmatch '#nottouser') {
|
||||
docker rm -f $containerName 2>&1 | Out-Null
|
||||
throw "Output missing #nottouser marker"
|
||||
}
|
||||
|
||||
# Verify output directories exist
|
||||
docker exec $containerName test -d /srv/test_complete/output/fitresult/touser
|
||||
if ($LASTEXITCODE -ne 0) {
|
||||
docker rm -f $containerName 2>&1 | Out-Null
|
||||
throw "Output directory touser not found"
|
||||
}
|
||||
|
||||
docker exec $containerName test -d /srv/test_complete/output/clninput
|
||||
if ($LASTEXITCODE -ne 0) {
|
||||
docker rm -f $containerName 2>&1 | Out-Null
|
||||
throw "Output directory clninput not found"
|
||||
}
|
||||
|
||||
docker exec $containerName test -d /srv/test_complete/output/fitresult/nottouser
|
||||
if ($LASTEXITCODE -ne 0) {
|
||||
docker rm -f $containerName 2>&1 | Out-Null
|
||||
throw "Output directory nottouser not found"
|
||||
}
|
||||
|
||||
# Verify output directories contain files (at least one file should exist)
|
||||
$touserFiles = docker exec $containerName bash -c 'find /srv/test_complete/output/fitresult/touser -type f 2>/dev/null | wc -l'
|
||||
|
||||
if ([int]$touserFiles -le 0) {
|
||||
docker rm -f $containerName 2>&1 | Out-Null
|
||||
throw "No files found in touser output directory"
|
||||
}
|
||||
|
||||
# Clean up test container
|
||||
docker rm -f $containerName 2>&1 | Out-Null
|
||||
}
|
||||
|
||||
# Summary
|
||||
Write-Host ""
|
||||
Write-TestHeader "Test Summary"
|
||||
Write-Host "Passed: $script:TESTS_PASSED" -ForegroundColor Green
|
||||
if ($script:TESTS_FAILED -gt 0) {
|
||||
Write-Host "Failed: $script:TESTS_FAILED" -ForegroundColor Red
|
||||
Cleanup
|
||||
exit 1
|
||||
} else {
|
||||
Write-Host "Failed: $script:TESTS_FAILED" -ForegroundColor Green
|
||||
Write-Host "`nAll tests passed!" -ForegroundColor Green
|
||||
Cleanup
|
||||
exit 0
|
||||
}
|
||||
+333
@@ -0,0 +1,333 @@
|
||||
#!/bin/bash
|
||||
# Test script for PISCAL Docker image
|
||||
# Verifies build, executable presence, and basic functionality
|
||||
|
||||
set -e # Exit on any error
|
||||
|
||||
IMAGE_NAME="piscal-server"
|
||||
IMAGE_TAG="test"
|
||||
TEST_CONTAINER="piscal-test-$$"
|
||||
TEST_DIR=$(mktemp -d)
|
||||
SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
|
||||
|
||||
# Colors for output
|
||||
RED='\033[0;31m'
|
||||
GREEN='\033[0;32m'
|
||||
YELLOW='\033[1;33m'
|
||||
NC='\033[0m' # No Color
|
||||
|
||||
# Cleanup function
|
||||
cleanup() {
|
||||
echo -e "\n${YELLOW}Cleaning up...${NC}"
|
||||
docker rm -f "$TEST_CONTAINER" 2>/dev/null || true
|
||||
rm -rf "$TEST_DIR" 2>/dev/null || true
|
||||
}
|
||||
trap cleanup EXIT
|
||||
|
||||
# Test counter
|
||||
TESTS_PASSED=0
|
||||
TESTS_FAILED=0
|
||||
|
||||
# Test function
|
||||
run_test() {
|
||||
local test_name="$1"
|
||||
echo -e "\n${YELLOW}Testing: $test_name${NC}"
|
||||
if eval "$2"; then
|
||||
echo -e "${GREEN}✓ PASS: $test_name${NC}"
|
||||
((TESTS_PASSED++))
|
||||
return 0
|
||||
else
|
||||
echo -e "${RED}✗ FAIL: $test_name${NC}"
|
||||
((TESTS_FAILED++))
|
||||
return 1
|
||||
fi
|
||||
}
|
||||
|
||||
echo "=========================================="
|
||||
echo "PISCAL Docker Image Test Suite"
|
||||
echo "=========================================="
|
||||
|
||||
# Test 1: Build verification
|
||||
run_test "Docker image builds successfully" "
|
||||
docker build -t ${IMAGE_NAME}:${IMAGE_TAG} . > /dev/null 2>&1
|
||||
"
|
||||
|
||||
# Test 2: Executable check
|
||||
run_test "PISCAL executable exists at /srv/piscal" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} test -f /srv/piscal
|
||||
"
|
||||
|
||||
run_test "PISCAL executable is executable" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} test -x /srv/piscal
|
||||
"
|
||||
|
||||
run_test "PISCAL executable can be executed (version check)" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} /srv/piscal --help > /dev/null 2>&1 || \
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} /srv/piscal 2>&1 | head -1 > /dev/null
|
||||
"
|
||||
|
||||
# Test 3: Manager scripts check
|
||||
run_test "piscal_manager.sh exists and is executable" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} test -x /srv/piscal_manager.sh
|
||||
"
|
||||
|
||||
run_test "piscal_launcher.sh exists and is executable" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} test -x /srv/piscal_launcher.sh
|
||||
"
|
||||
|
||||
run_test "piscal_launcher.cfg exists" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} test -f /srv/piscal_launcher.cfg
|
||||
"
|
||||
|
||||
run_test "subdir_year.sh exists and is executable" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} test -x /srv/subdir_year.sh
|
||||
"
|
||||
|
||||
# Test 4: SSH configuration
|
||||
run_test "SSH server is installed" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} which sshd > /dev/null
|
||||
"
|
||||
|
||||
run_test "launcher user exists" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} id launcher > /dev/null
|
||||
"
|
||||
|
||||
run_test "launcher user is in sudo group" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} groups launcher | grep -q sudo
|
||||
"
|
||||
|
||||
run_test "/run/sshd directory exists" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} test -d /run/sshd
|
||||
"
|
||||
|
||||
# Test 5: Functional test with piscal_manager.sh - test all status states
|
||||
run_test "piscal_manager.sh: Status 'not started' for new directory" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} bash -c '
|
||||
mkdir -p /srv/test_status/input
|
||||
cd /srv
|
||||
status=\$(bash piscal_manager.sh -d test_status 2>&1)
|
||||
echo \"\$status\" | grep -q \"not started\"
|
||||
'
|
||||
"
|
||||
|
||||
run_test "piscal_manager.sh: Error handling - missing directory" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} bash -c '
|
||||
cd /srv
|
||||
status=\$(bash piscal_manager.sh -d nonexistent_dir 2>&1)
|
||||
echo \"\$status\" | grep -q \"not found\"
|
||||
'
|
||||
"
|
||||
|
||||
run_test "piscal_manager.sh: Error handling - missing input directory" "
|
||||
docker run --rm ${IMAGE_NAME}:${IMAGE_TAG} bash -c '
|
||||
mkdir -p /srv/test_noinput
|
||||
cd /srv
|
||||
status=\$(bash piscal_manager.sh -d test_noinput 2>&1)
|
||||
echo \"\$status\" | grep -q \"input directory.*not found\"
|
||||
'
|
||||
"
|
||||
|
||||
run_test "piscal_manager.sh: Launch job returns 'started' status" "
|
||||
# Create test directory structure
|
||||
mkdir -p \"${TEST_DIR}/input\"
|
||||
cp \"${SCRIPT_DIR}/sample_data/LeafInput-valid.csv\" \"${TEST_DIR}/input/\"
|
||||
|
||||
# Start container with test data mounted
|
||||
docker run -d --name \"${TEST_CONTAINER}\" \
|
||||
-v \"${TEST_DIR}:/test\" \
|
||||
${IMAGE_NAME}:${IMAGE_TAG} \
|
||||
tail -f /dev/null > /dev/null 2>&1
|
||||
|
||||
# Wait for container to be ready
|
||||
sleep 2
|
||||
|
||||
# Create working directory structure inside container (relative to /srv)
|
||||
docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
mkdir -p /srv/test_work/input
|
||||
cp /test/input/*.csv /srv/test_work/input/ 2>/dev/null || true
|
||||
'
|
||||
|
||||
# Launch job using piscal_manager.sh
|
||||
result=\$(docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
cd /srv
|
||||
bash piscal_manager.sh -d test_work -p C3_photosynthesis_leafweb -s -t 2>&1
|
||||
')
|
||||
|
||||
# Check for 'started' status
|
||||
echo \"\$result\" | grep -q \"started\"
|
||||
|
||||
# Clean up test container
|
||||
docker rm -f \"${TEST_CONTAINER}\" > /dev/null 2>&1 || true
|
||||
"
|
||||
|
||||
run_test "piscal_manager.sh: Status 'running' while job is active" "
|
||||
# Create test directory structure
|
||||
mkdir -p \"${TEST_DIR}/input\"
|
||||
cp \"${SCRIPT_DIR}/sample_data/LeafInput-valid.csv\" \"${TEST_DIR}/input/\"
|
||||
|
||||
# Start container with test data mounted
|
||||
docker run -d --name \"${TEST_CONTAINER}\" \
|
||||
-v \"${TEST_DIR}:/test\" \
|
||||
${IMAGE_NAME}:${IMAGE_TAG} \
|
||||
tail -f /dev/null > /dev/null 2>&1
|
||||
|
||||
# Wait for container to be ready
|
||||
sleep 2
|
||||
|
||||
# Create working directory structure inside container (relative to /srv)
|
||||
docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
mkdir -p /srv/test_running/input
|
||||
cp /test/input/*.csv /srv/test_running/input/ 2>/dev/null || true
|
||||
'
|
||||
|
||||
# Launch job in background
|
||||
docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
cd /srv
|
||||
bash piscal_manager.sh -d test_running -p C3_photosynthesis_leafweb -s -t > /dev/null 2>&1
|
||||
' || true
|
||||
|
||||
# Wait a moment for job to start
|
||||
sleep 1
|
||||
|
||||
# Check status (should be 'running' or 'complete' depending on speed)
|
||||
status=\$(docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
cd /srv
|
||||
bash piscal_manager.sh -d test_running 2>&1 | head -1
|
||||
')
|
||||
|
||||
# Status should be either 'running' or 'complete'
|
||||
echo \"\$status\" | grep -qE \"^(running|complete)\$\"
|
||||
|
||||
# Clean up test container
|
||||
docker rm -f \"${TEST_CONTAINER}\" > /dev/null 2>&1 || true
|
||||
"
|
||||
|
||||
run_test "piscal_manager.sh: Cannot launch if already running" "
|
||||
# Create test directory structure
|
||||
mkdir -p \"${TEST_DIR}/input\"
|
||||
cp \"${SCRIPT_DIR}/sample_data/LeafInput-valid.csv\" \"${TEST_DIR}/input/\"
|
||||
|
||||
# Start container with test data mounted
|
||||
docker run -d --name \"${TEST_CONTAINER}\" \
|
||||
-v \"${TEST_DIR}:/test\" \
|
||||
${IMAGE_NAME}:${IMAGE_TAG} \
|
||||
tail -f /dev/null > /dev/null 2>&1
|
||||
|
||||
# Wait for container to be ready
|
||||
sleep 2
|
||||
|
||||
# Create working directory structure inside container (relative to /srv)
|
||||
docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
mkdir -p /srv/test_already/input
|
||||
cp /test/input/*.csv /srv/test_already/input/ 2>/dev/null || true
|
||||
'
|
||||
|
||||
# Create a fake running process by creating PID file with current shell PID
|
||||
docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
echo \$\$ > /srv/test_already/piscal.pid
|
||||
'
|
||||
|
||||
# Try to launch - should fail with 'still running'
|
||||
result=\$(docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
cd /srv
|
||||
bash piscal_manager.sh -d test_already -p C3_photosynthesis_leafweb -s -t 2>&1
|
||||
' || echo \"still running\")
|
||||
|
||||
# Check for 'still running' status
|
||||
echo \"\$result\" | grep -q \"still running\"
|
||||
|
||||
# Clean up test container
|
||||
docker rm -f \"${TEST_CONTAINER}\" > /dev/null 2>&1 || true
|
||||
"
|
||||
|
||||
run_test "piscal_manager.sh: Status 'complete' with output verification" "
|
||||
# Create test directory structure
|
||||
mkdir -p \"${TEST_DIR}/input\"
|
||||
cp \"${SCRIPT_DIR}/sample_data/LeafInput-valid.csv\" \"${TEST_DIR}/input/\"
|
||||
|
||||
# Start container with test data mounted
|
||||
docker run -d --name \"${TEST_CONTAINER}\" \
|
||||
-v \"${TEST_DIR}:/test\" \
|
||||
${IMAGE_NAME}:${IMAGE_TAG} \
|
||||
tail -f /dev/null > /dev/null 2>&1
|
||||
|
||||
# Wait for container to be ready
|
||||
sleep 2
|
||||
|
||||
# Create working directory structure inside container (relative to /srv)
|
||||
docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
mkdir -p /srv/test_complete/input
|
||||
cp /test/input/*.csv /srv/test_complete/input/ 2>/dev/null || true
|
||||
'
|
||||
|
||||
# Launch job using piscal_manager.sh
|
||||
docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
cd /srv
|
||||
bash piscal_manager.sh -d test_complete -p C3_photosynthesis_leafweb -s -t > /dev/null 2>&1
|
||||
' || true
|
||||
|
||||
# Wait for job to complete (with timeout) - use a script inside container
|
||||
docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
max_wait=120
|
||||
wait_time=0
|
||||
status=\"\"
|
||||
while [ \$wait_time -lt \$max_wait ]; do
|
||||
cd /srv
|
||||
status=\$(bash piscal_manager.sh -d test_complete 2>&1 | head -1)
|
||||
if echo \"\$status\" | grep -q \"complete\"; then
|
||||
break
|
||||
fi
|
||||
if echo \"\$status\" | grep -q \"not started\"; then
|
||||
sleep 2
|
||||
wait_time=\$((wait_time + 2))
|
||||
continue
|
||||
fi
|
||||
if echo \"\$status\" | grep -q \"running\"; then
|
||||
sleep 5
|
||||
wait_time=\$((wait_time + 5))
|
||||
continue
|
||||
fi
|
||||
break
|
||||
done
|
||||
# Verify status is complete
|
||||
echo \"\$status\" | grep -q \"complete\"
|
||||
'
|
||||
|
||||
# Get full status output to verify output structure
|
||||
full_output=\$(docker exec \"${TEST_CONTAINER}\" bash -c '
|
||||
cd /srv
|
||||
bash piscal_manager.sh -d test_complete 2>&1
|
||||
')
|
||||
|
||||
# Verify output contains the expected markers
|
||||
echo \"\$full_output\" | grep -q \"#touser\"
|
||||
echo \"\$full_output\" | grep -q \"#clninput\"
|
||||
echo \"\$full_output\" | grep -q \"#nottouser\"
|
||||
|
||||
# Verify output directories exist
|
||||
docker exec \"${TEST_CONTAINER}\" test -d /srv/test_complete/output/fitresult/touser
|
||||
docker exec \"${TEST_CONTAINER}\" test -d /srv/test_complete/output/clninput
|
||||
docker exec \"${TEST_CONTAINER}\" test -d /srv/test_complete/output/fitresult/nottouser
|
||||
|
||||
# Verify output directories contain files (at least one file should exist)
|
||||
touser_files=\$(docker exec \"${TEST_CONTAINER}\" bash -c 'find /srv/test_complete/output/fitresult/touser -type f 2>/dev/null | wc -l')
|
||||
[ \"\$touser_files\" -gt 0 ]
|
||||
|
||||
# Clean up test container
|
||||
docker rm -f \"${TEST_CONTAINER}\" > /dev/null 2>&1 || true
|
||||
"
|
||||
|
||||
# Summary
|
||||
echo ""
|
||||
echo "=========================================="
|
||||
echo "Test Summary"
|
||||
echo "=========================================="
|
||||
echo -e "${GREEN}Passed: ${TESTS_PASSED}${NC}"
|
||||
if [ $TESTS_FAILED -gt 0 ]; then
|
||||
echo -e "${RED}Failed: ${TESTS_FAILED}${NC}"
|
||||
exit 1
|
||||
else
|
||||
echo -e "${GREEN}Failed: ${TESTS_FAILED}${NC}"
|
||||
echo -e "\n${GREEN}All tests passed!${NC}"
|
||||
exit 0
|
||||
fi
|
||||
Reference in New Issue
Block a user