Add piscal manager scripts

2022-09-19 11:48:27 -04:00
parent ad2ee8a4ae
commit 04f31fe6a4
7 changed files with 409 additions and 0 deletions
@@ -0,0 +1,115 @@
+#!/bin/bash
+# piscal launcher
+
+usage="$(basename "$0") [-h] -d working_directory [-u notify_url] -- script to launch Piscal
+
+where:
+    -h  show this help text
+    -d  working directory
+    -f  input filename
+    -t  suppress storage copy
+    -u  url to notify on completion"
+
+# http://stackoverflow.com/a/246128/99492
+base_directory="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
+working_directory=""
+output_directory_base_name="output"
+input_directory_name="input"
+cleaned_input_directory_name="clninput"
+touser_directory_name="fitresult/touser"
+nottouser_directory_name="fitresult/nottouser"
+
+# import the settings from piscal.cfg
+# $piscal_executable and $storage_directory
+. "$base_directory/piscal_launcher.cfg"
+
+while getopts "hd:f:u:t" opt; do
+    case "$opt" in
+    h )
+        echo "$usage"
+        exit
+        ;;
+    d )
+        working_directory=$OPTARG
+        ;;
+    t )
+        suppress_storage_copy=true
+        ;;
+    u )
+        notify_url=$OPTARG
+        ;;
+    \?) printf "illegal option: -%s\n" "$OPTARG" >&2
+        echo "$usage" >&2
+        exit 1
+        ;;
+    esac
+done
+
+if [ -z "$working_directory" ]; then
+    echo "working directory required (-d)"
+    exit 1
+fi
+if [ ! -d "$working_directory" ]; then
+    echo "working directory $working_directory not found"
+    exit 1
+fi
+output_directory_base="$working_directory/$output_directory_base_name"
+output_directory_touser="$output_directory_base/$touser_directory_name"
+output_directory_nottouser="$output_directory_base/$nottouser_directory_name"
+cleaned_input_directory="$output_directory_base/$cleaned_input_directory_name"
+run_directory="$working_directory/run"
+
+# setup output directories
+if [ ! -d "$output_directory_base" ]; then
+    mkdir "$output_directory_base"
+fi
+if [ ! -d "$cleaned_input_directory" ]; then
+    mkdir "$cleaned_input_directory"
+fi
+
+#find "$working_directory/$input_directory_name" -maxdepth 1 -type f\
+#    -exec cp {} "$cleaned_input_directory" \;
+
+if [ ! -d "$output_directory_base/fitresult" ]; then
+    mkdir "$output_directory_base/fitresult"
+fi
+if [ ! -d "$output_directory_touser" ]; then
+    mkdir "$output_directory_touser"
+fi
+if [ ! -d "$output_directory_nottouser" ]; then
+    mkdir "$output_directory_nottouser"
+fi
+if [ ! -d "$run_directory" ]; then
+    mkdir "$run_directory"
+fi
+
+# run piscal
+pushd $run_directory >> /dev/null
+
+if [ -z "$test_output_directory" ]; then
+    eval $piscal_executable
+else
+    cp -r "$test_output_directory"/* "$output_directory_base"/
+fi
+
+popd >> /dev/null
+
+# copy output to storage
+if [ -z "$suppress_storage_copy" ]; then
+    cp "$output_directory_touser"/* "$storage_directory"/output/ 2>/dev/null
+    cp "$output_directory_nottouser"/* "$storage_directory"/output/ 2>/dev/null
+    cp "$cleaned_input_directory"/* "$storage_directory"/input/ 2>/dev/null
+
+    mv_script=$base_directory/subdir_year.sh
+    pushd "$storage_directory"/output >> /dev/null
+    "$mv_script"
+    popd >> /dev/null
+    pushd "$storage_directory"/input >> /dev/null
+    "$mv_script"
+    popd >> /dev/null
+fi
+
+# notify given url of completion
+if [ -n "$notify_url" ]; then
+    wget -qO- -t 1 "$notify_url" # &> /dev/null 2>&1
+fi