Add piscal manager scripts

2022-09-19 11:48:27 -04:00
parent ad2ee8a4ae
commit 04f31fe6a4
7 changed files with 409 additions and 0 deletions
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+./ # the working directory for Piscal processing
+./piscal.cfg # Piscal configuration - first line has Photosynthetic Pathway type
+             # followed by a list of all files in ./input
+             # C3_photosynthesis_leafweb, C4_photosynthesis_leafweb
+             # CAM_photosynthesis_leafweb
+./piscal.err # Contains any stderr output from launching Piscal, should be empty
+             # unless there is a problem with the system or executable
+./piscal.pid # file containing one line - the process ID which Piscal
+             # is running under. this is used to check if Piscal is currently
+             # executing or if it has completed
+
+./input/     # directory containing all unprocessed LeafInput files
+./input/Wild_Capsicum1.csv # example input copied from LeafWeb
+./input/Wild_Capsicum2.csv # ""
+
+./output/    # directory piscal creates to store all output
+
+./output/clninput/ # directory containing cleaned leaf input, for the purpose
+                   # of making that data available for search in LeafWeb
+./output/clninput/20160311152630Wild_Capsicum1.csv # example cleaned input
+./output/clninput/20160311152630Wild_Capsicum2.csv # ""
+
+./output/fitresult/ # directory containing fitresult generated by Piscal
+./output/fitresult/touser/    # output results sent to user and to storage
+./output/fitresult/touser/cntrlbestparameters.csv # example output
+./output/fitresult/touser/errormessage   # file containing any error 
+                                         # messages processed by Piscal
+./output/fitresult/touser/warningmessage # file containing any warning
+                                         # messages processed by Piscal
+
+./output/fitresult/nottouser/ # Output results sent to storage only