208 lines
8.1 KiB
C#
208 lines
8.1 KiB
C#
using System;
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using System.Collections.Generic;
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using System.IO;
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using System.Linq;
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using LeafWeb.Core.Entities;
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using LeafWeb.Core.Parsers;
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using LeafWeb.Core.Utility;
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using NUnit.Framework;
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namespace LeafWeb.Core.Tests.Parsers
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{
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[TestFixture]
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public class LeafInputCsvParserTests
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{
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private const string ContentDirectory = @"Parsers\LeafInputData\";
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[Test]
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public void Parse_Cleaned()
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{
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-cleaned.csv");
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var leafInput = new LeafInputCsvParser(fileInfo);
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var input = leafInput.Parse();
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Assert.That(input.InvestigatorName, Is.EqualTo("Valid Cleaned"));
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var site = input.Site;
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Assert.That(site.SiteId, Is.Null);
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Assert.That(site.Latitude, Is.EqualTo(-20.75d));
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var photosynthetic = input.Photosynthetic;
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Assert.That(photosynthetic.GammaStar, Is.EqualTo(0));
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var data = input.Data;
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Assert.That(data.Count(), Is.GreaterThan(2));
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var dataItem = data.First();
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Assert.That(dataItem.Obs, Is.EqualTo(10));
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Assert.That(dataItem.Photo, Is.EqualTo(10.49195882));
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}
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[Test]
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public void Parse_Cleaned_AnnaDay1()
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{
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "20171115002141clean10c_day3_high.csv");
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var leafInput = new LeafInputCsvParser(fileInfo);
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var input = leafInput.Parse();
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Assert.That(input.InvestigatorName, Is.EqualTo("Anna Schyman"));
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var site = input.Site;
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Assert.That(site.SiteId, Is.EqualTo("LNU"));
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Assert.That(site.Latitude, Is.EqualTo(56d));
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var photosynthetic = input.Photosynthetic;
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Assert.That(photosynthetic.GammaStar, Is.EqualTo(0));
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var data = input.Data;
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Assert.That(data.Count, Is.GreaterThan(2));
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var dataItem = data.First();
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Assert.That(dataItem.Obs, Is.EqualTo(85d));
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//Assert.That(dataItem.Photo, Is.EqualTo(10.49195882));
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}
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[Test]
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public void Parse_Valid()
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{
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-valid.csv");
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var leafInput = new LeafInputCsvParser(fileInfo);
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var input = leafInput.Parse();
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Assert.That(input.InvestigatorName, Is.EqualTo("Valid Name"));
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Assert.That(input.ContactInformation, Is.EqualTo("validname@ornl.gov"));
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Assert.That(input.SiteName, Is.EqualTo("FACE"));
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Assert.That(input.VegetationType, Is.EqualTo("tropical forest"));
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Assert.That(input.SoilType, Is.EqualTo("dense soil"));
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Assert.That(input.MajorSpecies, Is.EqualTo("Tulip Poplar, Oak"));
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Assert.That(input.SampleLeafLightEnv, Is.EqualTo("heavily shaded from above"));
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Assert.That(input.WaterStressAssessment, Is.EqualTo("Little to no stress"));
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Assert.That(input.InstrumentUsed, Is.EqualTo("Licor-6400"));
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Assert.That(input.ExtraInfo, Is.EqualTo("dear01"));
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var site = input.Site;
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Assert.That(site.SiteId, Is.EqualTo("Metropolitano"));
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Assert.That(site.Latitude, Is.EqualTo(8.98333));
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Assert.That(site.Longitude, Is.EqualTo(-79.55));
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Assert.That(site.Elevation, Is.Null);
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Assert.That(site.SampleYear, Is.EqualTo(2013));
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Assert.That(site.SampleDayOfYear, Is.EqualTo(22));
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Assert.That(site.GrowSeasonStart, Is.Null);
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Assert.That(site.GrowSeasonEnd, Is.Null);
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Assert.That(site.StandAge, Is.Null);
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Assert.That(site.CanopyHeight, Is.Null);
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Assert.That(site.LeafAreaIndex, Is.Null);
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Assert.That(site.SpeciesSampled, Is.EqualTo("Dendropanax_arboreus"));
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Assert.That(site.AverageTimeResolution, Is.Null);
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Assert.That(site.SampleHeight, Is.Null);
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Assert.That(site.LeafAge, Is.Null);
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Assert.That(site.SpecificLeafArea, Is.EqualTo(245.5609363));
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Assert.That(site.LfNitrogenContent, Is.EqualTo(2.19));
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Assert.That(site.LfCarbonContent, Is.EqualTo(46.03));
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Assert.That(site.LfPhosphContent, Is.EqualTo(0.129929353));
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//Assert.That(site.WoodPorosity, Is.Null);
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//Assert.That(site.SapWoodDensity, Is.Null);
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var photosynthetic = input.Photosynthetic;
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Assert.That(photosynthetic.GammaStar, Is.EqualTo(1.2));
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Assert.That(photosynthetic.Kc, Is.EqualTo(2.3));
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Assert.That(photosynthetic.Ko, Is.EqualTo(3.4));
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Assert.That(photosynthetic.Alpha, Is.EqualTo(4.5));
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Assert.That(photosynthetic.Rd, Is.EqualTo(6.5));
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Assert.That(photosynthetic.gi, Is.EqualTo(4.3));
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var data = input.Data;
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Assert.That(data.Count(), Is.GreaterThan(2));
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var dataItem = data.First();
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Assert.That(dataItem.Obs, Is.EqualTo(2));
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Assert.That(dataItem.HHMMSS, Is.EqualTo("11:26:17"));
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Assert.That(dataItem.FTime, Is.EqualTo(681.5));
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Assert.That(dataItem.Photo, Is.EqualTo(6.707855907));
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Assert.That(dataItem.AdjPhoto, Is.EqualTo(6.707855907));
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Assert.That(dataItem.StomCond, Is.EqualTo(0.066161416));
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Assert.That(dataItem.Ci, Is.EqualTo(185.9999057));
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Assert.That(dataItem.Trmmol, Is.EqualTo(0.936751155));
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Assert.That(dataItem.VpdL, Is.EqualTo(1.386027641));
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Assert.That(dataItem.Area, Is.EqualTo(2));
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Assert.That(dataItem.StmRat, Is.EqualTo(1));
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Assert.That(dataItem.BLCond, Is.EqualTo(9.289719582));
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Assert.That(dataItem.Tair, Is.EqualTo(29.09575272));
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Assert.That(dataItem.Tleaf, Is.EqualTo(29.91356087));
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Assert.That(dataItem.TBlk, Is.EqualTo(28.63459015));
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Assert.That(dataItem.CO2R, Is.EqualTo(360.0646362));
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Assert.That(dataItem.CO2S, Is.EqualTo(355.3765869));
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Assert.That(dataItem.H2OR, Is.EqualTo(27.71545029));
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Assert.That(dataItem.H2OS, Is.EqualTo(28.32151604));
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Assert.That(dataItem.RH_R, Is.EqualTo(69.04498291));
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Assert.That(dataItem.RH_S, Is.EqualTo(70.5548172));
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Assert.That(dataItem.Flow, Is.EqualTo(300.3703613));
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Assert.That(dataItem.PARi, Is.EqualTo(500.4228821));
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Assert.That(dataItem.PARo, Is.EqualTo(23.31687355));
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Assert.That(dataItem.Press, Is.EqualTo(100.7472458));
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Assert.That(dataItem.CsMch, Is.EqualTo(1.491710782));
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Assert.That(dataItem.HsMch, Is.EqualTo(10.9474802));
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Assert.That(dataItem.StableF, Is.EqualTo(0.5));
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Assert.That(dataItem.Status, Is.EqualTo("111115"));
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Assert.That(dataItem.PhiPS2, Is.Null);
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Assert.That(dataItem.OxygenPress, Is.Null);
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}
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[Test]
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public void Parse_TitlesRemoved()
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{
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-titlesRemoved.csv");
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var leafInput = new LeafInputCsvParser(fileInfo);
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var input = leafInput.Parse();
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Assert.That(input.InvestigatorName, Is.EqualTo("Valid Name"));
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Assert.That(input.ContactInformation, Is.EqualTo("validname@ornl.gov"));
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Assert.That(input.SiteName, Is.EqualTo("FACE"));
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Assert.That(input.VegetationType, Is.EqualTo("tropical forest"));
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Assert.That(input.SoilType, Is.EqualTo("dense soil"));
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Assert.That(input.MajorSpecies, Is.EqualTo("Tulip Poplar, Oak"));
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Assert.That(input.SampleLeafLightEnv, Is.EqualTo("heavily shaded from above"));
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Assert.That(input.WaterStressAssessment, Is.EqualTo("Little to no stress"));
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Assert.That(input.InstrumentUsed, Is.EqualTo("Licor-6400"));
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Assert.That(input.ExtraInfo, Is.EqualTo("dear01"));
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}
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[Test]
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public void Parse_IncompleteRows()
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{
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-incompleteRows.csv");
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var parser = new LeafInputCsvParser(fileInfo);
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Assert.That(() => parser.Parse(), Throws.TypeOf<ParseException>());
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}
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[Test]
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public void Parse_NoData()
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{
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-noData.csv");
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var parser = new LeafInputCsvParser(fileInfo);
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var input = parser.Parse();
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}
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[Explicit]
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public void Parse_FindIssues()
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{
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var dir = @"C:\Users\poprhythm\Documents\code\LeafWeb\Notes\leafweb database work\newcurves\RemovableDisk\curves";
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var files = Directory.GetFiles(dir, "*.csv").Select(f => new FileInfo(f)).ToList();
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var leafInputs = new List<LeafInputData>();
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var num = 1;
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foreach (var file in files)
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{
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try
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{
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var parser = new LeafInputCsvParser(file);
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var leafInput = parser.Parse();
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leafInputs.Add(leafInput);
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Console.WriteLine("{3}/{4}, {0}, {1}, {2}", file.Name, leafInput.InvestigatorName, leafInput.ContactInformation, num++, files.Count);
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}
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catch (Exception ex)
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{
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File.AppendAllLines(@"C:\Temp\errors.txt", new[] { string.Format("{1} : {0}", ex.Message, file.Name) });
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Console.WriteLine("{1} : {0}", ex.Message, file.Name);
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}
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}
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LeafInputCsvParser.ExportCsv(@"C:\Temp\test.csv", leafInputs);
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}
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}
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}
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