New conversion complete
This commit is contained in:
@@ -0,0 +1,25 @@
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using System.Linq;
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using LeafWeb.Core.Charter;
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using LeafWeb.Core.Models;
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using LeafWeb.Core.Parsers;
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using NUnit.Framework;
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namespace LeafWeb.Core.Tests.Charter
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{
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public class CurveDataConverterTests
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{
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private const string ContentDirectory = @"Parsers\LeafOutputData\";
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[Test]
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public void Convert_Valid()
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{
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "cntrlcomparison_Wild Capsicum.csv");
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CntrlComparison[] cntrlComparison;
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using (var parser = new CntrlComparisonParser(fileInfo))
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cntrlComparison = parser.Parse();
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var curves = CurveDataConverter.Convert(cntrlComparison);
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Assert.That(curves.Count(),Is.EqualTo(7));
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}
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}
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}
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@@ -43,7 +43,9 @@
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<Reference Include="System.Xml" />
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</ItemGroup>
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<ItemGroup>
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<Compile Include="Charter\CurveDataConverterTests.cs" />
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<Compile Include="Parsers\CntrlComparisonParserTests.cs" />
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<Compile Include="FileUtility.cs" />
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<Compile Include="Properties\AssemblyInfo.cs" />
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<Compile Include="Parsers\LeafInputCsvParserTests.cs" />
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<Compile Include="Parsers\CurveDataListTests.cs" />
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@@ -0,0 +1,14 @@
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using System;
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using System.IO;
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namespace LeafWeb.Core.Tests
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{
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public static class FileUtility
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{
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public static FileInfo GetContentFile(string contentDirectory, string fileName)
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{
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var path = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, contentDirectory);
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return new FileInfo(path + fileName);
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}
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}
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}
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@@ -11,18 +11,12 @@ namespace LeafWeb.Core.Tests.Parsers
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[TestFixture]
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public class CntrlComparisonParserTests
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{
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protected const string ContentDirectory = @"Parsers\LeafOutputData\";
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private static FileInfo GetContentFile(string fileName)
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{
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var path = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, ContentDirectory);
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return new FileInfo(path + fileName);
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}
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private const string ContentDirectory = @"Parsers\LeafOutputData\";
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[Test]
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public void Parse_Valid()
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{
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var fileInfo = GetContentFile("cntrlcomparison_Wild Capsicum.csv");
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "cntrlcomparison_Wild Capsicum.csv");
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CntrlComparison[] cntrlComparison;
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using (var parser = new CntrlComparisonParser(fileInfo))
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@@ -1,6 +1,4 @@
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using System;
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using System.IO;
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using LeafWeb.Core.Charter;
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using LeafWeb.Core.CharterOld;
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using NUnit.Framework;
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namespace LeafWeb.Core.Tests.Parsers
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@@ -8,18 +6,12 @@ namespace LeafWeb.Core.Tests.Parsers
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[TestFixture]
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public class CurveDataListTests
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{
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protected const string ContentDirectory = @"Services\LeafOutputData\";
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private static FileInfo GetContentFile(string fileName)
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{
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var path = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, ContentDirectory);
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return new FileInfo(path + fileName);
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}
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private const string ContentDirectory = @"Parsers\LeafOutputData\";
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[Test]
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public void Parse_Valid()
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{
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var fileInfo = GetContentFile("cntrlcomparison_Wild Capsicum.csv");
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "cntrlcomparison_Wild Capsicum.csv");
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var cntrlComparison = new CurveDataList();
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using (var reader = fileInfo.OpenText())
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{
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@@ -12,18 +12,13 @@ namespace LeafWeb.Core.Tests.Parsers
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[TestFixture]
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public class LeafInputCsvParserTests
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{
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protected const string ContentDirectory = @"Parsers\LeafInputData\";
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private static FileInfo GetContentFile(string fileName)
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{
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var path = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, ContentDirectory);
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return new FileInfo(path + fileName);
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}
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private const string ContentDirectory = @"Parsers\LeafInputData\";
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[Test]
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public void Parse_Valid()
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{
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var fileInfo = GetContentFile("LeafInput-valid.csv");
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FileUtility.GetContentFile(ContentDirectory, "LeafInput-valid.csv");
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-valid.csv");
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var leafInput = new LeafInputCsvParser(fileInfo);
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var input = leafInput.Parse();
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@@ -109,7 +104,7 @@ namespace LeafWeb.Core.Tests.Parsers
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[Test]
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public void Parse_TitlesRemoved()
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{
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var fileInfo = GetContentFile("LeafInput-titlesRemoved.csv");
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-titlesRemoved.csv");
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var leafInput = new LeafInputCsvParser(fileInfo);
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var input = leafInput.Parse();
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@@ -128,7 +123,7 @@ namespace LeafWeb.Core.Tests.Parsers
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[Test]
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public void Parse_IncompleteRows()
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{
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var fileInfo = GetContentFile("LeafInput-incompleteRows.csv");
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-incompleteRows.csv");
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var parser = new LeafInputCsvParser(fileInfo);
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Assert.That(() => parser.Parse(), Throws.TypeOf<ParseException>());
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}
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@@ -136,7 +131,7 @@ namespace LeafWeb.Core.Tests.Parsers
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[Test]
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public void Parse_NoData()
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{
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var fileInfo = GetContentFile("LeafInput-noData.csv");
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var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-noData.csv");
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var parser = new LeafInputCsvParser(fileInfo);
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var input = parser.Parse();
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}
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+10
-26
@@ -1,37 +1,21 @@
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using System.IO;
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using System.ComponentModel;
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namespace LeafWeb.Core.Charter
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{
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public class CurveData
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{
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private readonly string _curveId;
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public string CurveId { get; set; }
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public string CurveId => _curveId;
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[DisplayName("Internal conductance fixed, compensation point and M-M constants fixed")]
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public CurveParamSet FixedCndFixedCmp { get; set; }
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// 1
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public CurveParamSet FixedCndFixedCmp { get; }
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[DisplayName("Internal conductance fixed, compensation point and M-M constants estimated")]
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public CurveParamSet FixedCndEstimatedCmp { get; set; }
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// 2
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public CurveParamSet FixedCndEstimatedCmp { get; }
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[DisplayName("Internal conductance estimated, compensation point and M-M constants fixed")]
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public CurveParamSet EstimatedCndFixedCmp { get; set; }
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// 3
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public CurveParamSet EstimatedCndFixedCmp { get; }
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// 4
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public CurveParamSet EstimatedCndEstimatedCmp { get; }
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public CurveData(TextReader sr, ref int lineNbr)
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{
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// For each curve in the output file there are four sets of data.
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FixedCndFixedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
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FixedCndEstimatedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
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EstimatedCndFixedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
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EstimatedCndEstimatedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
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}
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[DisplayName("Internal conductance estimated, compensation point and M-M constants estimated")]
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public CurveParamSet EstimatedCndEstimatedCmp { get; set; }
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}
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}
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@@ -0,0 +1,128 @@
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using System;
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using System.Collections.Generic;
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using System.Linq;
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using LeafWeb.Core.Models;
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using LeafWeb.Core.Utility;
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namespace LeafWeb.Core.Charter
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{
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public class CurveDataConverter
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{
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public static IEnumerable<CurveData> Convert(IEnumerable<CntrlComparison> cntrlComparison)
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{
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var comparisonGroups =
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from comparison in cntrlComparison
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group comparison by comparison.CurveID into curves
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select new
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{
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CurveID = curves.Key,
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FitType = from curve in curves
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group curve by new {curve.FitGi, curve.FitGammaStar} into grp
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select new
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{
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grp.Key.FitGi,
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grp.Key.FitGammaStar,
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Comparison = grp.SingleOrDefault()
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}
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};
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foreach (var comparisonGroup in comparisonGroups)
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{
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if (comparisonGroup.FitType.Count() != 4)
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throw new ArgumentException(
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$"{comparisonGroup.CurveID} should have 4 data sets, only has {comparisonGroup.FitType.Count()}");
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var curveData = new CurveData {CurveId = comparisonGroup.CurveID};
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foreach (var fitType in comparisonGroup.FitType)
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{
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var paramSet = ConvertParamSet(fitType.Comparison);
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// fixed = not fitted
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// estimated = fitted
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// gi = internal conductance = "Cnd"
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// gammastar = chloroplastic CO2 partial pressure photocompensation point = "Cmp"
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// put each comparison into the correct curve location
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if (!fitType.FitGi && !fitType.FitGammaStar)
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curveData.FixedCndFixedCmp = paramSet;
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else if (!fitType.FitGi && fitType.FitGammaStar)
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curveData.FixedCndEstimatedCmp = paramSet;
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else if (fitType.FitGi && !fitType.FitGammaStar)
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curveData.EstimatedCndFixedCmp = paramSet;
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else if (fitType.FitGi && fitType.FitGammaStar)
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curveData.EstimatedCndEstimatedCmp = paramSet;
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}
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// Check all data is present
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if (curveData.FixedCndFixedCmp == null)
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throw new ArgumentException(
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$"{comparisonGroup.CurveID} missing data for {ReflectionExtensions.GetPropertyDisplayName<CurveData>(c=>c.FixedCndFixedCmp)}");
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if (curveData.FixedCndEstimatedCmp == null)
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throw new ArgumentException(
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$"{comparisonGroup.CurveID} missing data for {ReflectionExtensions.GetPropertyDisplayName<CurveData>(c=>c.FixedCndEstimatedCmp)}");
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if (curveData.EstimatedCndFixedCmp == null)
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throw new ArgumentException(
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$"{comparisonGroup.CurveID} missing data for {ReflectionExtensions.GetPropertyDisplayName<CurveData>(c=>c.EstimatedCndFixedCmp)}");
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if (curveData.EstimatedCndEstimatedCmp == null)
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throw new ArgumentException(
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$"{comparisonGroup.CurveID} missing data for {ReflectionExtensions.GetPropertyDisplayName<CurveData>(c=>c.EstimatedCndEstimatedCmp)}");
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yield return curveData;
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}
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}
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private static CurveParamSet ConvertParamSet(CntrlComparison comparison)
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{
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var curveParamSet = new CurveParamSet();
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foreach (var fittingInfo in comparison.FittingInfo)
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{
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Set(curveParamSet, fittingInfo);
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}
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foreach (var photosyntheticInfo in comparison.PhotosyntheticInfo)
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{
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Set(curveParamSet, photosyntheticInfo);
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}
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return curveParamSet;
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}
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private static void Set(CurveParamSet paramSet, CntrlComparisonPhotosyntheticInfo item)
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{
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AddXyIfInRange(item.CO2cc, item.Ac, paramSet.AcChloroData.Add); // Ac(y),CO2cc(x)
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AddXyIfInRange(item.CO2cj, item.Aj, paramSet.AjChloroData.Add); // Aj(y),CO2cj(x)
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AddXyIfInRange(item.CO2ct, item.At, paramSet.AtChloroData.Add); // At(y),CO2ct(x)
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AddXyIfInRange(item.CO2i, item.Ac, paramSet.AcInterData.Add); // Ac(y),CO2i(x)
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AddXyIfInRange(item.CO2i, item.Aj, paramSet.AcInterData.Add); // Aj(y),CO2i(x)
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AddXyIfInRange(item.CO2i, item.At, paramSet.AtInterData.Add); // Aj(y),CO2i(x)
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}
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private static void AddXyIfInRange(double x, double y, Action<XyPoint> set)
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{
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var xyPoint = new XyPoint(x, y);
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if (xyPoint.YIsInRange(-20.0, 50.0))
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set(xyPoint);
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}
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private static void Set(CurveParamSet paramSet, CntrlComparisonFittingInfo fittingInfo)
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{
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var xyPoint1 = new XyPoint(fittingInfo.PCO2c, fittingInfo.AnetMeas); // AnetMeas(y), PCO2c(x)
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var xyPoint2 = new XyPoint(fittingInfo.PCO2i, fittingInfo.AnetMeas);
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switch (fittingInfo.PointLimitType)
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{
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case 1:
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paramSet.AnetMeasChloro1Data.Add(xyPoint1);
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paramSet.AnetMeasInter1Data.Add(xyPoint2);
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break;
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case 2:
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paramSet.AnetMeasChloro2Data.Add(xyPoint1);
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paramSet.AnetMeasInter2Data.Add(xyPoint2);
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break;
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case 3:
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paramSet.AnetMeasChloro3Data.Add(xyPoint1);
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paramSet.AnetMeasInter3Data.Add(xyPoint2);
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break;
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}
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}
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}
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}
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@@ -1,6 +1,4 @@
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using System.Collections.Generic;
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using System.IO;
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using LeafWeb.Core.Utility;
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namespace LeafWeb.Core.Charter
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{
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@@ -19,148 +17,5 @@ namespace LeafWeb.Core.Charter
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public List<XyPoint> AcInterData { get; } = new List<XyPoint>();
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public List<XyPoint> AjInterData { get; } = new List<XyPoint>();
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public List<XyPoint> AtInterData { get; } = new List<XyPoint>();
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public CurveParamSet(TextReader sr, ref int lineNbr, ref string curveId)
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{
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bool curveIdSet = false, doneWithAnet = false;
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string line;
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List<string> phrases;
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while (!doneWithAnet)
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{
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lineNbr++;
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line = sr.ReadLine();
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if (line == null)
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{
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throw new ParseException("Unexpected end-of-file at line " + lineNbr);
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}
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phrases = SplitCsvLine(line);
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var firstField = phrases[0];
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if (firstField.Equals("CO2i"))
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{
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doneWithAnet = true;
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}
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else
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{
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// The fields on the line:
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// Column Name
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// 0 CurveID
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// 1 ChlFlUse
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// 2 FitGi
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// 3 FitGamma
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// 4 FitKco
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// 5 FitRd
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// 6 FitAlpha
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// 7 LimitCombina
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// 8 PCO2i
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// 9 PCO2c
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// 10 AnetMeas
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// 11 AnetCal
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// 12 weitedrms
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// 13 PointLimitType
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if (!curveIdSet)
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{
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curveId = firstField;
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curveIdSet = true;
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}
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var xyPoint1 = new XyPoint(phrases[9], phrases[10]); // AnetMeas(y), PCO2c(x)
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var xyPoint2 = new XyPoint(phrases[8], phrases[10]);
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var pointLimitType = int.Parse(phrases[13]);
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switch (pointLimitType)
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{
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case 1:
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AnetMeasChloro1Data.Add(xyPoint1);
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AnetMeasInter1Data.Add(xyPoint2);
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break;
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case 2:
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AnetMeasChloro2Data.Add(xyPoint1);
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AnetMeasInter2Data.Add(xyPoint2);
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break;
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case 3:
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AnetMeasChloro3Data.Add(xyPoint1);
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AnetMeasInter3Data.Add(xyPoint2);
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break;
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}
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}
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}
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// The next set of lines will have three pairs of x,y-coordinates to save.
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// A blank line signals the end of the data.
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var moreData = true;
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while (moreData)
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{
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// The fields on the line:
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// Column Name
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// 0 CO2i
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// 1 CO2cc
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// 2 Ac
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// 3 CO2cj
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// 4 Aj
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// 5 CO2ct
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// 6 At
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lineNbr++;
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line = sr.ReadLine();
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if (line == null)
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{
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throw new ParseException("Unexpected end-of-file at line " + lineNbr);
|
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}
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if (line.Length == 0)
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moreData = false;
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else
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{
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phrases = SplitCsvLine(line);
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var xyPoint1 = new XyPoint(phrases[1],phrases[2]); // Ac(y),CO2cc(x)
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if (xyPoint1.YIsInRange(-20.0, 50.0))
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AcChloroData.Add(xyPoint1);
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xyPoint1 = new XyPoint(phrases[3], phrases[4]); // Aj(y),CO2cj(x)
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if (xyPoint1.YIsInRange(-20.0, 50.0))
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AjChloroData.Add(xyPoint1);
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xyPoint1 = new XyPoint(phrases[5], phrases[6]); // At(y),CO2ct(x)
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if (xyPoint1.YIsInRange(-20.0, 50.0))
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AtChloroData.Add(xyPoint1);
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xyPoint1 = new XyPoint(phrases[0], phrases[2]); // Ac(y),CO2i(x)
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if (xyPoint1.YIsInRange(-20.0, 50.0))
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AcInterData.Add(xyPoint1);
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xyPoint1 = new XyPoint(phrases[0], phrases[4]); // Aj(y),CO2i(x)
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if (xyPoint1.YIsInRange(-20.0, 50.0))
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AjInterData.Add(xyPoint1);
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xyPoint1 = new XyPoint(phrases[0], phrases[6]); // At(y),CO2i(x)
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||||
if (xyPoint1.YIsInRange(-20.0, 50.0))
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||||
AtInterData.Add(xyPoint1);
|
||||
}
|
||||
}
|
||||
}
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||||
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||||
/// <summary>
|
||||
/// This method assumes that the argument is a comma-, blank-, or
|
||||
/// tab-separated set of strings. It returns an ArrayList of those
|
||||
/// quantities. Consecutive commas will be returned as an empty string,
|
||||
/// but all empty strings at the end of the line will be thrown away.
|
||||
/// </summary>
|
||||
/// <param name="line"></param>
|
||||
/// <returns></returns>
|
||||
private static List<string> SplitCsvLine(string line)
|
||||
{
|
||||
int i;
|
||||
var separator = new [] {',', ' ', '\t'};
|
||||
var phrases = line.Split(separator);
|
||||
|
||||
var retPhrases = new List<string>();
|
||||
for (i = 0; i < phrases.Length; i++)
|
||||
{
|
||||
var phrase = phrases[i].Trim();
|
||||
if (phrase.Length > 0)
|
||||
retPhrases.Add(phrase);
|
||||
}
|
||||
|
||||
return retPhrases;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -2,16 +2,16 @@
|
||||
{
|
||||
public class XyPoint
|
||||
{
|
||||
public XyPoint(string x, string y)
|
||||
{
|
||||
X = double.Parse(x);
|
||||
Y = double.Parse(y);
|
||||
}
|
||||
|
||||
public double X { get; private set; }
|
||||
|
||||
public double Y { get; private set; }
|
||||
|
||||
public XyPoint(double x, double y)
|
||||
{
|
||||
X = x;
|
||||
Y = y;
|
||||
}
|
||||
|
||||
public bool YIsInRange(double lowEnd, double highEnd)
|
||||
{
|
||||
return (Y >= lowEnd) && (Y <= highEnd);
|
||||
|
||||
@@ -0,0 +1,37 @@
|
||||
using System.IO;
|
||||
|
||||
namespace LeafWeb.Core.CharterOld
|
||||
{
|
||||
public class CurveData
|
||||
{
|
||||
private readonly string _curveId;
|
||||
|
||||
public string CurveId => _curveId;
|
||||
|
||||
// 1
|
||||
public CurveParamSet FixedCndFixedCmp { get; }
|
||||
|
||||
// 2
|
||||
public CurveParamSet FixedCndEstimatedCmp { get; }
|
||||
|
||||
// 3
|
||||
public CurveParamSet EstimatedCndFixedCmp { get; }
|
||||
|
||||
// 4
|
||||
public CurveParamSet EstimatedCndEstimatedCmp { get; }
|
||||
|
||||
|
||||
public CurveData(TextReader sr, ref int lineNbr)
|
||||
{
|
||||
// For each curve in the output file there are four sets of data.
|
||||
|
||||
FixedCndFixedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
|
||||
|
||||
FixedCndEstimatedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
|
||||
|
||||
EstimatedCndFixedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
|
||||
|
||||
EstimatedCndEstimatedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1,7 +1,7 @@
|
||||
using System.Collections.Generic;
|
||||
using System.IO;
|
||||
|
||||
namespace LeafWeb.Core.Charter
|
||||
namespace LeafWeb.Core.CharterOld
|
||||
{
|
||||
public class CurveDataList
|
||||
{
|
||||
@@ -0,0 +1,166 @@
|
||||
using System.Collections.Generic;
|
||||
using System.IO;
|
||||
using LeafWeb.Core.Utility;
|
||||
|
||||
namespace LeafWeb.Core.CharterOld
|
||||
{
|
||||
public class CurveParamSet
|
||||
{
|
||||
public List<XyPoint> AnetMeasChloro1Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2c, for PointLimitType=1
|
||||
public List<XyPoint> AnetMeasChloro2Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2c, for PointLimitType=2
|
||||
public List<XyPoint> AnetMeasChloro3Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2c, for PointLimitType=3
|
||||
public List<XyPoint> AnetMeasInter1Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2i, for PointLimitType=1
|
||||
public List<XyPoint> AnetMeasInter2Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2i, for PointLimitType=2
|
||||
public List<XyPoint> AnetMeasInter3Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2i, for PointLimitType=3
|
||||
|
||||
public List<XyPoint> AcChloroData { get; } = new List<XyPoint>();
|
||||
public List<XyPoint> AjChloroData { get; } = new List<XyPoint>();
|
||||
public List<XyPoint> AtChloroData { get; } = new List<XyPoint>();
|
||||
public List<XyPoint> AcInterData { get; } = new List<XyPoint>();
|
||||
public List<XyPoint> AjInterData { get; } = new List<XyPoint>();
|
||||
public List<XyPoint> AtInterData { get; } = new List<XyPoint>();
|
||||
|
||||
public CurveParamSet(TextReader sr, ref int lineNbr, ref string curveId)
|
||||
{
|
||||
bool curveIdSet = false, doneWithAnet = false;
|
||||
string line;
|
||||
List<string> phrases;
|
||||
|
||||
while (!doneWithAnet)
|
||||
{
|
||||
lineNbr++;
|
||||
line = sr.ReadLine();
|
||||
if (line == null)
|
||||
{
|
||||
throw new ParseException("Unexpected end-of-file at line " + lineNbr);
|
||||
}
|
||||
|
||||
phrases = SplitCsvLine(line);
|
||||
|
||||
var firstField = phrases[0];
|
||||
if (firstField.Equals("CO2i"))
|
||||
{
|
||||
doneWithAnet = true;
|
||||
}
|
||||
else
|
||||
{
|
||||
// The fields on the line:
|
||||
// Column Name
|
||||
// 0 CurveID
|
||||
// 1 ChlFlUse
|
||||
// 2 FitGi
|
||||
// 3 FitGamma
|
||||
// 4 FitKco
|
||||
// 5 FitRd
|
||||
// 6 FitAlpha
|
||||
// 7 LimitCombina
|
||||
// 8 PCO2i
|
||||
// 9 PCO2c
|
||||
// 10 AnetMeas
|
||||
// 11 AnetCal
|
||||
// 12 weitedrms
|
||||
// 13 PointLimitType
|
||||
|
||||
if (!curveIdSet)
|
||||
{
|
||||
curveId = firstField;
|
||||
curveIdSet = true;
|
||||
}
|
||||
var xyPoint1 = new XyPoint(phrases[9], phrases[10]); // AnetMeas(y), PCO2c(x)
|
||||
var xyPoint2 = new XyPoint(phrases[8], phrases[10]);
|
||||
var pointLimitType = int.Parse(phrases[13]);
|
||||
switch (pointLimitType)
|
||||
{
|
||||
case 1:
|
||||
AnetMeasChloro1Data.Add(xyPoint1);
|
||||
AnetMeasInter1Data.Add(xyPoint2);
|
||||
break;
|
||||
case 2:
|
||||
AnetMeasChloro2Data.Add(xyPoint1);
|
||||
AnetMeasInter2Data.Add(xyPoint2);
|
||||
break;
|
||||
case 3:
|
||||
AnetMeasChloro3Data.Add(xyPoint1);
|
||||
AnetMeasInter3Data.Add(xyPoint2);
|
||||
break;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
// The next set of lines will have three pairs of x,y-coordinates to save.
|
||||
// A blank line signals the end of the data.
|
||||
|
||||
var moreData = true;
|
||||
while (moreData)
|
||||
{
|
||||
// The fields on the line:
|
||||
// Column Name
|
||||
// 0 CO2i
|
||||
// 1 CO2cc
|
||||
// 2 Ac
|
||||
// 3 CO2cj
|
||||
// 4 Aj
|
||||
// 5 CO2ct
|
||||
// 6 At
|
||||
|
||||
lineNbr++;
|
||||
line = sr.ReadLine();
|
||||
if (line == null)
|
||||
{
|
||||
throw new ParseException("Unexpected end-of-file at line " + lineNbr);
|
||||
}
|
||||
|
||||
if (line.Length == 0)
|
||||
moreData = false;
|
||||
else
|
||||
{
|
||||
phrases = SplitCsvLine(line);
|
||||
var xyPoint1 = new XyPoint(phrases[1],phrases[2]); // Ac(y),CO2cc(x)
|
||||
if (xyPoint1.YIsInRange(-20.0, 50.0))
|
||||
AcChloroData.Add(xyPoint1);
|
||||
xyPoint1 = new XyPoint(phrases[3], phrases[4]); // Aj(y),CO2cj(x)
|
||||
if (xyPoint1.YIsInRange(-20.0, 50.0))
|
||||
AjChloroData.Add(xyPoint1);
|
||||
xyPoint1 = new XyPoint(phrases[5], phrases[6]); // At(y),CO2ct(x)
|
||||
if (xyPoint1.YIsInRange(-20.0, 50.0))
|
||||
AtChloroData.Add(xyPoint1);
|
||||
|
||||
xyPoint1 = new XyPoint(phrases[0], phrases[2]); // Ac(y),CO2i(x)
|
||||
if (xyPoint1.YIsInRange(-20.0, 50.0))
|
||||
AcInterData.Add(xyPoint1);
|
||||
xyPoint1 = new XyPoint(phrases[0], phrases[4]); // Aj(y),CO2i(x)
|
||||
if (xyPoint1.YIsInRange(-20.0, 50.0))
|
||||
AjInterData.Add(xyPoint1);
|
||||
xyPoint1 = new XyPoint(phrases[0], phrases[6]); // At(y),CO2i(x)
|
||||
if (xyPoint1.YIsInRange(-20.0, 50.0))
|
||||
AtInterData.Add(xyPoint1);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/// <summary>
|
||||
/// This method assumes that the argument is a comma-, blank-, or
|
||||
/// tab-separated set of strings. It returns an ArrayList of those
|
||||
/// quantities. Consecutive commas will be returned as an empty string,
|
||||
/// but all empty strings at the end of the line will be thrown away.
|
||||
/// </summary>
|
||||
/// <param name="line"></param>
|
||||
/// <returns></returns>
|
||||
private static List<string> SplitCsvLine(string line)
|
||||
{
|
||||
int i;
|
||||
var separator = new [] {',', ' ', '\t'};
|
||||
var phrases = line.Split(separator);
|
||||
|
||||
var retPhrases = new List<string>();
|
||||
for (i = 0; i < phrases.Length; i++)
|
||||
{
|
||||
var phrase = phrases[i].Trim();
|
||||
if (phrase.Length > 0)
|
||||
retPhrases.Add(phrase);
|
||||
}
|
||||
|
||||
return retPhrases;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,20 @@
|
||||
namespace LeafWeb.Core.CharterOld
|
||||
{
|
||||
public class XyPoint
|
||||
{
|
||||
public XyPoint(string x, string y)
|
||||
{
|
||||
X = double.Parse(x);
|
||||
Y = double.Parse(y);
|
||||
}
|
||||
|
||||
public double X { get; private set; }
|
||||
|
||||
public double Y { get; private set; }
|
||||
|
||||
public bool YIsInRange(double lowEnd, double highEnd)
|
||||
{
|
||||
return (Y >= lowEnd) && (Y <= highEnd);
|
||||
}
|
||||
}
|
||||
}
|
||||
+9
-4
@@ -56,18 +56,22 @@
|
||||
<Reference Include="System.Xml" />
|
||||
</ItemGroup>
|
||||
<ItemGroup>
|
||||
<Compile Include="Charter\CurveData.cs" />
|
||||
<Compile Include="Charter\CurveDataConverter.cs" />
|
||||
<Compile Include="Charter\CurveParamSet.cs" />
|
||||
<Compile Include="Charter\XYPoint.cs" />
|
||||
<Compile Include="Models\CntrlComparison.cs" />
|
||||
<Compile Include="Models\CntrlComparisonFittingInfo.cs" />
|
||||
<Compile Include="Models\CntrlComparisonPhotosyntheticInfo.cs" />
|
||||
<Compile Include="Charter\CurveDataList.cs" />
|
||||
<Compile Include="Charter\CurveData.cs" />
|
||||
<Compile Include="Charter\CurveParamSet.cs" />
|
||||
<Compile Include="CharterOld\CurveDataList.cs" />
|
||||
<Compile Include="CharterOld\CurveData.cs" />
|
||||
<Compile Include="CharterOld\CurveParamSet.cs" />
|
||||
<Compile Include="Models\LeafInput.cs" />
|
||||
<Compile Include="Models\LeafInputData.cs" />
|
||||
<Compile Include="Models\LeafInputFile.cs" />
|
||||
<Compile Include="Models\LeafInputPhotosynthetic.cs" />
|
||||
<Compile Include="Models\LeafInputSite.cs" />
|
||||
<Compile Include="Charter\XYPoint.cs" />
|
||||
<Compile Include="CharterOld\XYPoint.cs" />
|
||||
<Compile Include="Utility\BoolTypeConverter.cs" />
|
||||
<Compile Include="Parsers\CntrlComparisonParser.cs" />
|
||||
<Compile Include="Parsers\CsvParserBase.cs" />
|
||||
@@ -76,6 +80,7 @@
|
||||
<Compile Include="Parsers\LeafInputCsvParser.cs" />
|
||||
<Compile Include="Utility\ParsedObjectFactory.cs" />
|
||||
<Compile Include="Utility\ParseException.cs" />
|
||||
<Compile Include="Utility\ReflectionExtensions.cs" />
|
||||
<Compile Include="Utility\StringExtensions.cs" />
|
||||
</ItemGroup>
|
||||
<ItemGroup>
|
||||
|
||||
@@ -1,5 +1,5 @@
|
||||
using System.Collections.Generic;
|
||||
using System.ComponentModel.DataAnnotations;
|
||||
using System.Linq;
|
||||
|
||||
namespace LeafWeb.Core.Models
|
||||
{
|
||||
@@ -11,5 +11,11 @@ namespace LeafWeb.Core.Models
|
||||
{
|
||||
public virtual IEnumerable<CntrlComparisonFittingInfo> FittingInfo { get; set; }
|
||||
public virtual IEnumerable<CntrlComparisonPhotosyntheticInfo> PhotosyntheticInfo { get; set; }
|
||||
|
||||
public string CurveID => FittingInfo.First().CurveID;
|
||||
|
||||
public bool FitGi => FittingInfo.First().FitGi;
|
||||
|
||||
public bool FitGammaStar => FittingInfo.First().FitGammaStar;
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,46 @@
|
||||
using System;
|
||||
using System.ComponentModel;
|
||||
using System.Diagnostics;
|
||||
using System.Linq;
|
||||
using System.Linq.Expressions;
|
||||
using System.Reflection;
|
||||
using Fasterflect;
|
||||
|
||||
namespace LeafWeb.Core.Utility
|
||||
{
|
||||
public static class ReflectionExtensions
|
||||
{
|
||||
public static string GetPropertyDisplayName<T>(Expression<Func<T, object>> propertyExpression)
|
||||
{
|
||||
var memberInfo = GetPropertyInformation(propertyExpression.Body);
|
||||
if (memberInfo == null)
|
||||
{
|
||||
throw new ArgumentException("No property reference expression was found.", nameof(propertyExpression));
|
||||
}
|
||||
|
||||
var attr = memberInfo.Attributes<DisplayNameAttribute>().SingleOrDefault();
|
||||
return attr == null ? memberInfo.Name : attr.DisplayName;
|
||||
}
|
||||
|
||||
public static MemberInfo GetPropertyInformation(Expression propertyExpression)
|
||||
{
|
||||
Debug.Assert(propertyExpression != null, "propertyExpression != null");
|
||||
var memberExpr = propertyExpression as MemberExpression;
|
||||
if (memberExpr == null)
|
||||
{
|
||||
var unaryExpr = propertyExpression as UnaryExpression;
|
||||
if (unaryExpr != null && unaryExpr.NodeType == ExpressionType.Convert)
|
||||
{
|
||||
memberExpr = unaryExpr.Operand as MemberExpression;
|
||||
}
|
||||
}
|
||||
|
||||
if (memberExpr != null && memberExpr.Member.MemberType == MemberTypes.Property)
|
||||
{
|
||||
return memberExpr.Member;
|
||||
}
|
||||
|
||||
return null;
|
||||
}
|
||||
}
|
||||
}
|
||||
+6
-1
@@ -1,6 +1,8 @@
|
||||
|
||||
Microsoft Visual Studio Solution File, Format Version 12.00
|
||||
# Visual Studio 2012
|
||||
# Visual Studio 14
|
||||
VisualStudioVersion = 14.0.23107.0
|
||||
MinimumVisualStudioVersion = 10.0.40219.1
|
||||
Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Web", "Web\Web.csproj", "{0809033D-DBB9-41AE-8811-9A9CFDFD8966}"
|
||||
EndProject
|
||||
Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Web.Tests", "Web.Tests\Web.Tests.csproj", "{0DBE7CB9-71B3-46BA-8045-0F1E36C1C8F7}"
|
||||
@@ -10,6 +12,9 @@ EndProject
|
||||
Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Core.Tests", "Core.Tests\Core.Tests.csproj", "{8207F6FE-EA80-41CA-81B5-ACD020FB0F3C}"
|
||||
EndProject
|
||||
Global
|
||||
GlobalSection(Performance) = preSolution
|
||||
HasPerformanceSessions = true
|
||||
EndGlobalSection
|
||||
GlobalSection(SolutionConfigurationPlatforms) = preSolution
|
||||
Debug|Any CPU = Debug|Any CPU
|
||||
Release|Any CPU = Release|Any CPU
|
||||
|
||||
@@ -10,22 +10,19 @@ namespace LeafWeb.Web.Charter
|
||||
public static class LeafWebCharter
|
||||
{
|
||||
// cntrlcomparison
|
||||
public static IEnumerable<Chart> ProduceCharts(List<CurveData> curveData)
|
||||
public static IEnumerable<Chart> ProduceCharts(CurveData curve)
|
||||
{
|
||||
var curve = curveData[1]; // TODO: why is only the [1] used?
|
||||
|
||||
var curveId = curve.CurveId;
|
||||
|
||||
var fcfc = CurveSeries(curveId, curve.FixedCndFixedCmp,
|
||||
"Internal conductance fixed, compensation point and M-M constants fixed");
|
||||
var fcec = CurveSeries(curveId, curve.FixedCndEstimatedCmp,
|
||||
"Internal conductance fixed, compensation point and M-M constants estimated");
|
||||
var ecfc = CurveSeries(curveId, curve.EstimatedCndFixedCmp,
|
||||
"Internal conductance estimated, compensation point and M-M constants fixed");
|
||||
var ecec = CurveSeries(curveId, curve.EstimatedCndEstimatedCmp,
|
||||
"Internal conductance estimated, compensation point and M-M constants estimated");
|
||||
var paramTitles = new[]
|
||||
{
|
||||
new {param = curve.FixedCndFixedCmp, title = "Internal conductance fixed, compensation point and M-M constants fixed" },
|
||||
new {param = curve.FixedCndEstimatedCmp, title = "Internal conductance fixed, compensation point and M-M constants estimated" },
|
||||
new {param = curve.EstimatedCndFixedCmp, title = "Internal conductance estimated, compensation point and M-M constants fixed" },
|
||||
new {param = curve.EstimatedCndEstimatedCmp,title = "Internal conductance estimated, compensation point and M-M constants estimated" },
|
||||
};
|
||||
|
||||
return new[] {fcfc, fcec, ecfc, ecec}.SelectMany(c => c);
|
||||
return paramTitles.SelectMany(item => CurveSeries(curveId, item.param, item.title));
|
||||
}
|
||||
|
||||
private static IEnumerable<Chart> CurveSeries(string curveId, CurveParamSet paramSet, string chartTitle)
|
||||
@@ -33,54 +30,36 @@ namespace LeafWeb.Web.Charter
|
||||
var chloroChart = GetChart("Chloroplastic CO2 partial pressure (Pa)");
|
||||
var interChart = GetChart("Intercellular CO2 partial pressure (Pa)");
|
||||
|
||||
var anetMeasChloro1 = paramSet.AnetMeasChloro1Data;
|
||||
var anetMeasChloro2 = paramSet.AnetMeasChloro2Data;
|
||||
var anetMeasChloro3 = paramSet.AnetMeasChloro3Data;
|
||||
|
||||
// Set the points for the symbol series for paramater set 1, chloroplastic
|
||||
SetAnetMeasPoints(anetMeasChloro1, chloroChart.Series["Rubisco-limited"]);
|
||||
SetAnetMeasPoints(anetMeasChloro2, chloroChart.Series["RuBP regeneration-limited"]);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasChloro1Data, chloroChart.Series["Rubisco-limited"]);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasChloro2Data, chloroChart.Series["RuBP regeneration-limited"]);
|
||||
|
||||
var tpuSeries = NewTpuSeries(anetMeasChloro3);
|
||||
SetAnetMeasPoints(anetMeasChloro3, tpuSeries);
|
||||
var tpuSeries = NewTpuSeries(paramSet.AnetMeasChloro3Data);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasChloro3Data, tpuSeries);
|
||||
chloroChart.Series.Add(tpuSeries);
|
||||
|
||||
var anetMeasInter1 = paramSet.AnetMeasInter1Data;
|
||||
var anetMeasInter2 = paramSet.AnetMeasInter2Data;
|
||||
var anetMeasInter3 = paramSet.AnetMeasInter3Data;
|
||||
|
||||
// Set the points for the symbol series for paramater set 1, intercellular
|
||||
SetAnetMeasPoints(anetMeasInter1, interChart.Series["Rubisco-limited"]);
|
||||
SetAnetMeasPoints(anetMeasInter2, interChart.Series["RuBP regeneration-limited"]);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasInter1Data, interChart.Series["Rubisco-limited"]);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasInter2Data, interChart.Series["RuBP regeneration-limited"]);
|
||||
|
||||
tpuSeries = NewTpuSeries(anetMeasInter3);
|
||||
SetAnetMeasPoints(anetMeasInter3, tpuSeries);
|
||||
tpuSeries = NewTpuSeries(paramSet.AnetMeasInter3Data);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasInter3Data, tpuSeries);
|
||||
interChart.Series.Add(tpuSeries);
|
||||
|
||||
var acChloroList = paramSet.AcChloroData;
|
||||
var ajChloroList = paramSet.AjChloroData;
|
||||
var atChloroList = paramSet.AtChloroData;
|
||||
|
||||
// Set the points on the asymptote curve for parameter set 1, chloroplast
|
||||
SetAsymptotePoints(acChloroList, chloroChart.Series["acCurve"]);
|
||||
SetAsymptotePoints(ajChloroList, chloroChart.Series["ajCurve"]);
|
||||
SetAsymptotePoints(atChloroList, chloroChart.Series["atCurve"]);
|
||||
|
||||
var acInterList = paramSet.AcInterData;
|
||||
var ajInterList = paramSet.AjInterData;
|
||||
var atInterList = paramSet.AtInterData;
|
||||
SetAsymptotePoints(paramSet.AcChloroData, chloroChart.Series["acCurve"]);
|
||||
SetAsymptotePoints(paramSet.AjChloroData, chloroChart.Series["ajCurve"]);
|
||||
SetAsymptotePoints(paramSet.AtChloroData, chloroChart.Series["atCurve"]);
|
||||
|
||||
// Set the points on the asymptote curve for parameter set 1, intercellular
|
||||
SetAsymptotePoints(acInterList, interChart.Series["acCurve"]);
|
||||
SetAsymptotePoints(ajInterList, interChart.Series["ajCurve"]);
|
||||
SetAsymptotePoints(atInterList, interChart.Series["atCurve"]);
|
||||
SetAsymptotePoints(paramSet.AcInterData, interChart.Series["acCurve"]);
|
||||
SetAsymptotePoints(paramSet.AjInterData, interChart.Series["ajCurve"]);
|
||||
SetAsymptotePoints(paramSet.AtInterData, interChart.Series["atCurve"]);
|
||||
|
||||
var axisFont = new Font("Times New Roman", 12, FontStyle.Bold);
|
||||
var titleFont = new Font("Times New Roman", 12, FontStyle.Bold);
|
||||
|
||||
var title = new Title("LeafWeb curveID = " + curveId +
|
||||
"\n" + chartTitle)
|
||||
{Font = titleFont};
|
||||
var title = new Title($"LeafWeb curveID = {curveId}\n{chartTitle}"){Font = titleFont};
|
||||
chloroChart.Titles.Add(title);
|
||||
interChart.Titles.Add(title);
|
||||
|
||||
@@ -89,6 +68,7 @@ namespace LeafWeb.Web.Charter
|
||||
|
||||
interChart.ChartAreas["ChartArea1"].AxisX.TitleFont = axisFont;
|
||||
interChart.ChartAreas["ChartArea1"].AxisY.TitleFont = axisFont;
|
||||
|
||||
yield return chloroChart;
|
||||
yield return interChart;
|
||||
}
|
||||
@@ -196,7 +176,7 @@ namespace LeafWeb.Web.Charter
|
||||
}
|
||||
});
|
||||
|
||||
var rubiscoLimited = new Series
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 8,
|
||||
BorderWidth = 3,
|
||||
@@ -209,10 +189,9 @@ namespace LeafWeb.Web.Charter
|
||||
Color = Color.Red,
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double
|
||||
};
|
||||
chart.Series.Add(rubiscoLimited);
|
||||
});
|
||||
|
||||
var rubpRegenerationLimited = new Series
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 9,
|
||||
BorderWidth = 3,
|
||||
@@ -225,10 +204,9 @@ namespace LeafWeb.Web.Charter
|
||||
Color = Color.Blue,
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double
|
||||
};
|
||||
chart.Series.Add(rubpRegenerationLimited);
|
||||
});
|
||||
|
||||
var acCurve = new Series
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 2,
|
||||
BorderWidth = 1,
|
||||
@@ -242,10 +220,9 @@ namespace LeafWeb.Web.Charter
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double,
|
||||
IsVisibleInLegend = false
|
||||
};
|
||||
chart.Series.Add(acCurve);
|
||||
});
|
||||
|
||||
var ajCurve = new Series
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 2,
|
||||
BorderWidth = 1,
|
||||
@@ -259,10 +236,9 @@ namespace LeafWeb.Web.Charter
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double,
|
||||
IsVisibleInLegend = false
|
||||
};
|
||||
chart.Series.Add(ajCurve);
|
||||
});
|
||||
|
||||
var atCurve = new Series
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 2,
|
||||
BorderWidth = 1,
|
||||
@@ -276,8 +252,7 @@ namespace LeafWeb.Web.Charter
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double,
|
||||
IsVisibleInLegend = false
|
||||
};
|
||||
chart.Series.Add(atCurve);
|
||||
});
|
||||
|
||||
return chart;
|
||||
}
|
||||
|
||||
@@ -0,0 +1,262 @@
|
||||
using System.Collections.Generic;
|
||||
using System.Drawing;
|
||||
using System.Linq;
|
||||
using System.Web.UI.DataVisualization.Charting;
|
||||
using System.Web.UI.WebControls;
|
||||
using CurveData = LeafWeb.Core.CharterOld.CurveData;
|
||||
using CurveParamSet = LeafWeb.Core.CharterOld.CurveParamSet;
|
||||
using XyPoint = LeafWeb.Core.CharterOld.XyPoint;
|
||||
|
||||
namespace LeafWeb.Web.Charter
|
||||
{
|
||||
public static class LeafWebCharterOld
|
||||
{
|
||||
// cntrlcomparison
|
||||
public static IEnumerable<Chart> ProduceCharts(CurveData curve)
|
||||
{
|
||||
var curveId = curve.CurveId;
|
||||
|
||||
var paramTitles = new[]
|
||||
{
|
||||
new {param = curve.FixedCndFixedCmp, title = "Internal conductance fixed, compensation point and M-M constants fixed" },
|
||||
new {param = curve.FixedCndEstimatedCmp, title = "Internal conductance fixed, compensation point and M-M constants estimated" },
|
||||
new {param = curve.EstimatedCndFixedCmp, title = "Internal conductance estimated, compensation point and M-M constants fixed" },
|
||||
new {param = curve.EstimatedCndEstimatedCmp,title = "Internal conductance estimated, compensation point and M-M constants estimated" },
|
||||
};
|
||||
|
||||
return paramTitles.SelectMany(item => CurveSeries(curveId, item.param, item.title));
|
||||
}
|
||||
|
||||
private static IEnumerable<Chart> CurveSeries(string curveId, CurveParamSet paramSet, string chartTitle)
|
||||
{
|
||||
var chloroChart = GetChart("Chloroplastic CO2 partial pressure (Pa)");
|
||||
var interChart = GetChart("Intercellular CO2 partial pressure (Pa)");
|
||||
|
||||
// Set the points for the symbol series for paramater set 1, chloroplastic
|
||||
SetAnetMeasPoints(paramSet.AnetMeasChloro1Data, chloroChart.Series["Rubisco-limited"]);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasChloro2Data, chloroChart.Series["RuBP regeneration-limited"]);
|
||||
|
||||
var tpuSeries = NewTpuSeries(paramSet.AnetMeasChloro3Data);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasChloro3Data, tpuSeries);
|
||||
chloroChart.Series.Add(tpuSeries);
|
||||
|
||||
// Set the points for the symbol series for paramater set 1, intercellular
|
||||
SetAnetMeasPoints(paramSet.AnetMeasInter1Data, interChart.Series["Rubisco-limited"]);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasInter2Data, interChart.Series["RuBP regeneration-limited"]);
|
||||
|
||||
tpuSeries = NewTpuSeries(paramSet.AnetMeasInter3Data);
|
||||
SetAnetMeasPoints(paramSet.AnetMeasInter3Data, tpuSeries);
|
||||
interChart.Series.Add(tpuSeries);
|
||||
|
||||
// Set the points on the asymptote curve for parameter set 1, chloroplast
|
||||
SetAsymptotePoints(paramSet.AcChloroData, chloroChart.Series["acCurve"]);
|
||||
SetAsymptotePoints(paramSet.AjChloroData, chloroChart.Series["ajCurve"]);
|
||||
SetAsymptotePoints(paramSet.AtChloroData, chloroChart.Series["atCurve"]);
|
||||
|
||||
// Set the points on the asymptote curve for parameter set 1, intercellular
|
||||
SetAsymptotePoints(paramSet.AcInterData, interChart.Series["acCurve"]);
|
||||
SetAsymptotePoints(paramSet.AjInterData, interChart.Series["ajCurve"]);
|
||||
SetAsymptotePoints(paramSet.AtInterData, interChart.Series["atCurve"]);
|
||||
|
||||
var axisFont = new Font("Times New Roman", 12, FontStyle.Bold);
|
||||
var titleFont = new Font("Times New Roman", 12, FontStyle.Bold);
|
||||
|
||||
var title = new Title($"LeafWeb curveID = {curveId}\n{chartTitle}"){Font = titleFont};
|
||||
chloroChart.Titles.Add(title);
|
||||
interChart.Titles.Add(title);
|
||||
|
||||
chloroChart.ChartAreas["ChartArea1"].AxisX.TitleFont = axisFont;
|
||||
chloroChart.ChartAreas["ChartArea1"].AxisY.TitleFont = axisFont;
|
||||
|
||||
interChart.ChartAreas["ChartArea1"].AxisX.TitleFont = axisFont;
|
||||
interChart.ChartAreas["ChartArea1"].AxisY.TitleFont = axisFont;
|
||||
|
||||
yield return chloroChart;
|
||||
yield return interChart;
|
||||
}
|
||||
|
||||
private static Series NewTpuSeries(IReadOnlyCollection<XyPoint> data)
|
||||
{
|
||||
var seriesName = "TPU-limited";
|
||||
if (data.Count == 0)
|
||||
seriesName = "Curve Asymptote";
|
||||
var series3 = new Series(seriesName)
|
||||
{
|
||||
MarkerSize = 9,
|
||||
BorderWidth = 3,
|
||||
XValueType = ChartValueType.Double,
|
||||
ChartType = SeriesChartType.Point,
|
||||
MarkerStyle = MarkerStyle.Square,
|
||||
ShadowColor = Color.Black,
|
||||
BorderColor = Color.Black,
|
||||
Color = Color.Orange,
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double
|
||||
};
|
||||
|
||||
return series3;
|
||||
}
|
||||
|
||||
private static void SetAnetMeasPoints(List<XyPoint> data, Series series)
|
||||
{
|
||||
// Set the points for the series from the ArrayList
|
||||
foreach (var xy in data)
|
||||
{
|
||||
series.Points.AddXY(xy.X, xy.Y);
|
||||
}
|
||||
}
|
||||
|
||||
private static void SetAsymptotePoints(List<XyPoint> data, Series series)
|
||||
{
|
||||
// Set the points for the series from the ArrayList
|
||||
foreach (var xy in data)
|
||||
{
|
||||
if ((xy.X != -9999) && (xy.Y != -9999))
|
||||
{
|
||||
series.Points.AddXY(xy.X, xy.Y);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
private static Chart GetChart(string axisXTitle, int width=700, int height=500)
|
||||
{
|
||||
var font = new Font(new FontFamily("Trebuchet MS"), 12, FontStyle.Bold);
|
||||
|
||||
var borderColor = Color.FromArgb(180, 26, 59, 105);
|
||||
var chart = new Chart
|
||||
{
|
||||
BackColor = Color.White,
|
||||
Width = Unit.Pixel(width),
|
||||
Height = Unit.Pixel(height),
|
||||
BorderSkin = {SkinStyle = BorderSkinStyle.Emboss},
|
||||
BorderColor = borderColor
|
||||
};
|
||||
|
||||
chart.Legends.Add(new Legend
|
||||
{
|
||||
Enabled = true,
|
||||
IsTextAutoFit = false,
|
||||
Name = "Default",
|
||||
Docking = Docking.Bottom,
|
||||
BackColor = Color.Transparent,
|
||||
Font = font
|
||||
});
|
||||
|
||||
chart.ChartAreas.Add(new ChartArea
|
||||
{
|
||||
Name = "ChartArea1",
|
||||
BorderColor = Color.FromArgb(64, 64, 64, 64),
|
||||
BorderDashStyle = ChartDashStyle.Solid,
|
||||
BackSecondaryColor = Color.White,
|
||||
BackColor = Color.OldLace,
|
||||
ShadowColor = Color.Transparent,
|
||||
BackGradientStyle = GradientStyle.TopBottom,
|
||||
Area3DStyle = new ChartArea3DStyle
|
||||
{
|
||||
Rotation = 25,
|
||||
Perspective = 9,
|
||||
LightStyle = LightStyle.Realistic,
|
||||
Inclination = 40,
|
||||
IsRightAngleAxes = false,
|
||||
WallWidth = 3,
|
||||
IsClustered = false
|
||||
},
|
||||
AxisY = new Axis
|
||||
{
|
||||
LineColor = Color.FromArgb(64, 64, 64, 64),
|
||||
Title = "Net assimilation rate (umol/m2/s)",
|
||||
LabelStyle = {Font = font},
|
||||
MajorGrid = new Grid {LineColor = Color.FromArgb(64, 64, 64, 64)}
|
||||
},
|
||||
AxisX = new Axis
|
||||
{
|
||||
LineColor = Color.FromArgb(64, 64, 64, 64),
|
||||
Minimum = 0,
|
||||
Title = axisXTitle,
|
||||
LabelStyle = {Font = font},
|
||||
MajorGrid = new Grid {LineColor = Color.FromArgb(64, 64, 64, 64)}
|
||||
}
|
||||
});
|
||||
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 8,
|
||||
BorderWidth = 3,
|
||||
XValueType = ChartValueType.Double,
|
||||
Name = "Rubisco-limited",
|
||||
ChartType = SeriesChartType.Point,
|
||||
MarkerStyle = MarkerStyle.Diamond,
|
||||
ShadowColor = Color.Black,
|
||||
BorderColor = borderColor,
|
||||
Color = Color.Red,
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double
|
||||
});
|
||||
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 9,
|
||||
BorderWidth = 3,
|
||||
XValueType = ChartValueType.Double,
|
||||
Name = "RuBP regeneration-limited",
|
||||
ChartType = SeriesChartType.Point,
|
||||
MarkerStyle = MarkerStyle.Circle,
|
||||
ShadowColor = Color.Black,
|
||||
BorderColor = borderColor,
|
||||
Color = Color.Blue,
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double
|
||||
});
|
||||
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 2,
|
||||
BorderWidth = 1,
|
||||
XValueType = ChartValueType.Double,
|
||||
Name = "acCurve",
|
||||
ChartType = SeriesChartType.Line,
|
||||
MarkerStyle = MarkerStyle.None,
|
||||
ShadowColor = Color.Black,
|
||||
BorderColor = borderColor,
|
||||
Color = Color.Red,
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double,
|
||||
IsVisibleInLegend = false
|
||||
});
|
||||
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 2,
|
||||
BorderWidth = 1,
|
||||
XValueType = ChartValueType.Double,
|
||||
Name = "ajCurve",
|
||||
ChartType = SeriesChartType.Line,
|
||||
MarkerStyle = MarkerStyle.None,
|
||||
ShadowColor = Color.Black,
|
||||
BorderColor = borderColor,
|
||||
Color = Color.Blue,
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double,
|
||||
IsVisibleInLegend = false
|
||||
});
|
||||
|
||||
chart.Series.Add(new Series
|
||||
{
|
||||
MarkerSize = 2,
|
||||
BorderWidth = 1,
|
||||
XValueType = ChartValueType.Double,
|
||||
Name = "atCurve",
|
||||
ChartType = SeriesChartType.Line,
|
||||
MarkerStyle = MarkerStyle.None,
|
||||
ShadowColor = Color.Black,
|
||||
BorderColor = borderColor,
|
||||
Color = Color.Orange,
|
||||
ShadowOffset = 0,
|
||||
YValueType = ChartValueType.Double,
|
||||
IsVisibleInLegend = false
|
||||
});
|
||||
|
||||
return chart;
|
||||
}
|
||||
}
|
||||
}
|
||||
@@ -1,13 +1,14 @@
|
||||
using System;
|
||||
using System.Collections.Generic;
|
||||
using System.Drawing;
|
||||
using System.IO;
|
||||
using System.Linq;
|
||||
using System.Web;
|
||||
using System.Web.Mvc;
|
||||
using System.Web.UI.DataVisualization.Charting;
|
||||
using System.Web.UI.WebControls;
|
||||
using LeafWeb.Core.Charter;
|
||||
using LeafWeb.Core.CharterOld;
|
||||
using LeafWeb.Core.Models;
|
||||
using LeafWeb.Core.Parsers;
|
||||
using LeafWeb.Web.Charter;
|
||||
|
||||
namespace LeafWeb.Web.Controllers
|
||||
@@ -20,6 +21,27 @@ namespace LeafWeb.Web.Controllers
|
||||
}
|
||||
|
||||
public ActionResult LeafCharts(int number)
|
||||
{
|
||||
var fileInfo = new FileInfo(@"C:\Users\poprhythm\Documents\code\LeafWeb\Core.Tests\Parsers\LeafOutputData\cntrlcomparison_Wild Capsicum.csv");
|
||||
|
||||
CntrlComparison[] cntrlComparison;
|
||||
using (var parser = new CntrlComparisonParser(fileInfo))
|
||||
cntrlComparison = parser.Parse();
|
||||
|
||||
var curveData = CurveDataConverter.Convert(cntrlComparison).ToArray();
|
||||
|
||||
var charts = LeafWebCharter.ProduceCharts(curveData[1]);
|
||||
|
||||
using (var ms = new MemoryStream())
|
||||
{
|
||||
charts.Skip(number).First().SaveImage(ms, ChartImageFormat.Png);
|
||||
ms.Seek(0, SeekOrigin.Begin);
|
||||
|
||||
return File(ms.ToArray(), "image/png", "mychart.png");
|
||||
}
|
||||
}
|
||||
|
||||
public ActionResult LeafChartsOld(int number)
|
||||
{
|
||||
var fileInfo = new FileInfo(@"C:\Users\poprhythm\Documents\code\LeafWeb\Core.Tests\Parsers\LeafOutputData\cntrlcomparison_Wild Capsicum.csv");
|
||||
var curveDataList = new CurveDataList();
|
||||
@@ -27,7 +49,7 @@ namespace LeafWeb.Web.Controllers
|
||||
{
|
||||
curveDataList.ReadFromStream(reader);
|
||||
}
|
||||
var charts = LeafWebCharter.ProduceCharts(curveDataList.CurveData);
|
||||
var charts = LeafWebCharterOld.ProduceCharts(curveDataList.CurveData[1]);
|
||||
|
||||
using (var ms = new MemoryStream())
|
||||
{
|
||||
|
||||
Vendored
+1
-1
@@ -1,4 +1,4 @@
|
||||
/**
|
||||
/**
|
||||
* @license AngularJS v1.4.7
|
||||
* (c) 2010-2015 Google, Inc. http://angularjs.org
|
||||
* License: MIT
|
||||
|
||||
@@ -1,8 +1,8 @@
|
||||
<img src="@Url.Action("LeafCharts", new {number=0})" alt="image" />
|
||||
<img src="@Url.Action("LeafCharts", new {number=1})" alt="image" />
|
||||
@*<img src="@Url.Action("LeafCharts", new {number=1})" alt="image" />
|
||||
<img src="@Url.Action("LeafCharts", new {number=2})" alt="image" />
|
||||
<img src="@Url.Action("LeafCharts", new {number=3})" alt="image" />
|
||||
<img src="@Url.Action("LeafCharts", new {number=4})" alt="image" />
|
||||
<img src="@Url.Action("LeafCharts", new {number=5})" alt="image" />
|
||||
<img src="@Url.Action("LeafCharts", new {number=6})" alt="image" />
|
||||
<img src="@Url.Action("LeafCharts", new {number=7})" alt="image" />
|
||||
<img src="@Url.Action("LeafCharts", new {number=7})" alt="image" />*@
|
||||
@@ -143,6 +143,7 @@
|
||||
<Compile Include="App_Start\BundleConfig.cs" />
|
||||
<Compile Include="App_Start\RouteConfig.cs" />
|
||||
<Compile Include="Charter\LeafWebCharter.cs" />
|
||||
<Compile Include="Charter\LeafWebCharterOld.cs" />
|
||||
<Compile Include="Controllers\LeafCharterController.cs" />
|
||||
<Compile Include="Controllers\PagesController.cs" />
|
||||
<Compile Include="Global.asax.cs">
|
||||
|
||||
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Reference in New Issue
Block a user