New conversion complete

This commit is contained in:
2015-12-07 12:38:58 -05:00
parent 5b85662bdb
commit 50ae6cb52c
25 changed files with 815 additions and 281 deletions
@@ -0,0 +1,25 @@
using System.Linq;
using LeafWeb.Core.Charter;
using LeafWeb.Core.Models;
using LeafWeb.Core.Parsers;
using NUnit.Framework;
namespace LeafWeb.Core.Tests.Charter
{
public class CurveDataConverterTests
{
private const string ContentDirectory = @"Parsers\LeafOutputData\";
[Test]
public void Convert_Valid()
{
var fileInfo = FileUtility.GetContentFile(ContentDirectory, "cntrlcomparison_Wild Capsicum.csv");
CntrlComparison[] cntrlComparison;
using (var parser = new CntrlComparisonParser(fileInfo))
cntrlComparison = parser.Parse();
var curves = CurveDataConverter.Convert(cntrlComparison);
Assert.That(curves.Count(),Is.EqualTo(7));
}
}
}
+2
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@@ -43,7 +43,9 @@
<Reference Include="System.Xml" /> <Reference Include="System.Xml" />
</ItemGroup> </ItemGroup>
<ItemGroup> <ItemGroup>
<Compile Include="Charter\CurveDataConverterTests.cs" />
<Compile Include="Parsers\CntrlComparisonParserTests.cs" /> <Compile Include="Parsers\CntrlComparisonParserTests.cs" />
<Compile Include="FileUtility.cs" />
<Compile Include="Properties\AssemblyInfo.cs" /> <Compile Include="Properties\AssemblyInfo.cs" />
<Compile Include="Parsers\LeafInputCsvParserTests.cs" /> <Compile Include="Parsers\LeafInputCsvParserTests.cs" />
<Compile Include="Parsers\CurveDataListTests.cs" /> <Compile Include="Parsers\CurveDataListTests.cs" />
+14
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@@ -0,0 +1,14 @@
using System;
using System.IO;
namespace LeafWeb.Core.Tests
{
public static class FileUtility
{
public static FileInfo GetContentFile(string contentDirectory, string fileName)
{
var path = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, contentDirectory);
return new FileInfo(path + fileName);
}
}
}
@@ -11,18 +11,12 @@ namespace LeafWeb.Core.Tests.Parsers
[TestFixture] [TestFixture]
public class CntrlComparisonParserTests public class CntrlComparisonParserTests
{ {
protected const string ContentDirectory = @"Parsers\LeafOutputData\"; private const string ContentDirectory = @"Parsers\LeafOutputData\";
private static FileInfo GetContentFile(string fileName)
{
var path = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, ContentDirectory);
return new FileInfo(path + fileName);
}
[Test] [Test]
public void Parse_Valid() public void Parse_Valid()
{ {
var fileInfo = GetContentFile("cntrlcomparison_Wild Capsicum.csv"); var fileInfo = FileUtility.GetContentFile(ContentDirectory, "cntrlcomparison_Wild Capsicum.csv");
CntrlComparison[] cntrlComparison; CntrlComparison[] cntrlComparison;
using (var parser = new CntrlComparisonParser(fileInfo)) using (var parser = new CntrlComparisonParser(fileInfo))
+3 -11
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@@ -1,6 +1,4 @@
using System; using LeafWeb.Core.CharterOld;
using System.IO;
using LeafWeb.Core.Charter;
using NUnit.Framework; using NUnit.Framework;
namespace LeafWeb.Core.Tests.Parsers namespace LeafWeb.Core.Tests.Parsers
@@ -8,18 +6,12 @@ namespace LeafWeb.Core.Tests.Parsers
[TestFixture] [TestFixture]
public class CurveDataListTests public class CurveDataListTests
{ {
protected const string ContentDirectory = @"Services\LeafOutputData\"; private const string ContentDirectory = @"Parsers\LeafOutputData\";
private static FileInfo GetContentFile(string fileName)
{
var path = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, ContentDirectory);
return new FileInfo(path + fileName);
}
[Test] [Test]
public void Parse_Valid() public void Parse_Valid()
{ {
var fileInfo = GetContentFile("cntrlcomparison_Wild Capsicum.csv"); var fileInfo = FileUtility.GetContentFile(ContentDirectory, "cntrlcomparison_Wild Capsicum.csv");
var cntrlComparison = new CurveDataList(); var cntrlComparison = new CurveDataList();
using (var reader = fileInfo.OpenText()) using (var reader = fileInfo.OpenText())
{ {
+6 -11
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@@ -12,18 +12,13 @@ namespace LeafWeb.Core.Tests.Parsers
[TestFixture] [TestFixture]
public class LeafInputCsvParserTests public class LeafInputCsvParserTests
{ {
protected const string ContentDirectory = @"Parsers\LeafInputData\"; private const string ContentDirectory = @"Parsers\LeafInputData\";
private static FileInfo GetContentFile(string fileName)
{
var path = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, ContentDirectory);
return new FileInfo(path + fileName);
}
[Test] [Test]
public void Parse_Valid() public void Parse_Valid()
{ {
var fileInfo = GetContentFile("LeafInput-valid.csv"); FileUtility.GetContentFile(ContentDirectory, "LeafInput-valid.csv");
var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-valid.csv");
var leafInput = new LeafInputCsvParser(fileInfo); var leafInput = new LeafInputCsvParser(fileInfo);
var input = leafInput.Parse(); var input = leafInput.Parse();
@@ -109,7 +104,7 @@ namespace LeafWeb.Core.Tests.Parsers
[Test] [Test]
public void Parse_TitlesRemoved() public void Parse_TitlesRemoved()
{ {
var fileInfo = GetContentFile("LeafInput-titlesRemoved.csv"); var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-titlesRemoved.csv");
var leafInput = new LeafInputCsvParser(fileInfo); var leafInput = new LeafInputCsvParser(fileInfo);
var input = leafInput.Parse(); var input = leafInput.Parse();
@@ -128,7 +123,7 @@ namespace LeafWeb.Core.Tests.Parsers
[Test] [Test]
public void Parse_IncompleteRows() public void Parse_IncompleteRows()
{ {
var fileInfo = GetContentFile("LeafInput-incompleteRows.csv"); var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-incompleteRows.csv");
var parser = new LeafInputCsvParser(fileInfo); var parser = new LeafInputCsvParser(fileInfo);
Assert.That(() => parser.Parse(), Throws.TypeOf<ParseException>()); Assert.That(() => parser.Parse(), Throws.TypeOf<ParseException>());
} }
@@ -136,7 +131,7 @@ namespace LeafWeb.Core.Tests.Parsers
[Test] [Test]
public void Parse_NoData() public void Parse_NoData()
{ {
var fileInfo = GetContentFile("LeafInput-noData.csv"); var fileInfo = FileUtility.GetContentFile(ContentDirectory, "LeafInput-noData.csv");
var parser = new LeafInputCsvParser(fileInfo); var parser = new LeafInputCsvParser(fileInfo);
var input = parser.Parse(); var input = parser.Parse();
} }
+10 -26
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@@ -1,37 +1,21 @@
using System.IO; using System.ComponentModel;
namespace LeafWeb.Core.Charter namespace LeafWeb.Core.Charter
{ {
public class CurveData public class CurveData
{ {
private readonly string _curveId; public string CurveId { get; set; }
public string CurveId => _curveId; [DisplayName("Internal conductance fixed, compensation point and M-M constants fixed")]
public CurveParamSet FixedCndFixedCmp { get; set; }
// 1 [DisplayName("Internal conductance fixed, compensation point and M-M constants estimated")]
public CurveParamSet FixedCndFixedCmp { get; } public CurveParamSet FixedCndEstimatedCmp { get; set; }
// 2 [DisplayName("Internal conductance estimated, compensation point and M-M constants fixed")]
public CurveParamSet FixedCndEstimatedCmp { get; } public CurveParamSet EstimatedCndFixedCmp { get; set; }
// 3 [DisplayName("Internal conductance estimated, compensation point and M-M constants estimated")]
public CurveParamSet EstimatedCndFixedCmp { get; } public CurveParamSet EstimatedCndEstimatedCmp { get; set; }
// 4
public CurveParamSet EstimatedCndEstimatedCmp { get; }
public CurveData(TextReader sr, ref int lineNbr)
{
// For each curve in the output file there are four sets of data.
FixedCndFixedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
FixedCndEstimatedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
EstimatedCndFixedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
EstimatedCndEstimatedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
}
} }
} }
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@@ -0,0 +1,128 @@
using System;
using System.Collections.Generic;
using System.Linq;
using LeafWeb.Core.Models;
using LeafWeb.Core.Utility;
namespace LeafWeb.Core.Charter
{
public class CurveDataConverter
{
public static IEnumerable<CurveData> Convert(IEnumerable<CntrlComparison> cntrlComparison)
{
var comparisonGroups =
from comparison in cntrlComparison
group comparison by comparison.CurveID into curves
select new
{
CurveID = curves.Key,
FitType = from curve in curves
group curve by new {curve.FitGi, curve.FitGammaStar} into grp
select new
{
grp.Key.FitGi,
grp.Key.FitGammaStar,
Comparison = grp.SingleOrDefault()
}
};
foreach (var comparisonGroup in comparisonGroups)
{
if (comparisonGroup.FitType.Count() != 4)
throw new ArgumentException(
$"{comparisonGroup.CurveID} should have 4 data sets, only has {comparisonGroup.FitType.Count()}");
var curveData = new CurveData {CurveId = comparisonGroup.CurveID};
foreach (var fitType in comparisonGroup.FitType)
{
var paramSet = ConvertParamSet(fitType.Comparison);
// fixed = not fitted
// estimated = fitted
// gi = internal conductance = "Cnd"
// gammastar = chloroplastic CO2 partial pressure photocompensation point = "Cmp"
// put each comparison into the correct curve location
if (!fitType.FitGi && !fitType.FitGammaStar)
curveData.FixedCndFixedCmp = paramSet;
else if (!fitType.FitGi && fitType.FitGammaStar)
curveData.FixedCndEstimatedCmp = paramSet;
else if (fitType.FitGi && !fitType.FitGammaStar)
curveData.EstimatedCndFixedCmp = paramSet;
else if (fitType.FitGi && fitType.FitGammaStar)
curveData.EstimatedCndEstimatedCmp = paramSet;
}
// Check all data is present
if (curveData.FixedCndFixedCmp == null)
throw new ArgumentException(
$"{comparisonGroup.CurveID} missing data for {ReflectionExtensions.GetPropertyDisplayName<CurveData>(c=>c.FixedCndFixedCmp)}");
if (curveData.FixedCndEstimatedCmp == null)
throw new ArgumentException(
$"{comparisonGroup.CurveID} missing data for {ReflectionExtensions.GetPropertyDisplayName<CurveData>(c=>c.FixedCndEstimatedCmp)}");
if (curveData.EstimatedCndFixedCmp == null)
throw new ArgumentException(
$"{comparisonGroup.CurveID} missing data for {ReflectionExtensions.GetPropertyDisplayName<CurveData>(c=>c.EstimatedCndFixedCmp)}");
if (curveData.EstimatedCndEstimatedCmp == null)
throw new ArgumentException(
$"{comparisonGroup.CurveID} missing data for {ReflectionExtensions.GetPropertyDisplayName<CurveData>(c=>c.EstimatedCndEstimatedCmp)}");
yield return curveData;
}
}
private static CurveParamSet ConvertParamSet(CntrlComparison comparison)
{
var curveParamSet = new CurveParamSet();
foreach (var fittingInfo in comparison.FittingInfo)
{
Set(curveParamSet, fittingInfo);
}
foreach (var photosyntheticInfo in comparison.PhotosyntheticInfo)
{
Set(curveParamSet, photosyntheticInfo);
}
return curveParamSet;
}
private static void Set(CurveParamSet paramSet, CntrlComparisonPhotosyntheticInfo item)
{
AddXyIfInRange(item.CO2cc, item.Ac, paramSet.AcChloroData.Add); // Ac(y),CO2cc(x)
AddXyIfInRange(item.CO2cj, item.Aj, paramSet.AjChloroData.Add); // Aj(y),CO2cj(x)
AddXyIfInRange(item.CO2ct, item.At, paramSet.AtChloroData.Add); // At(y),CO2ct(x)
AddXyIfInRange(item.CO2i, item.Ac, paramSet.AcInterData.Add); // Ac(y),CO2i(x)
AddXyIfInRange(item.CO2i, item.Aj, paramSet.AcInterData.Add); // Aj(y),CO2i(x)
AddXyIfInRange(item.CO2i, item.At, paramSet.AtInterData.Add); // Aj(y),CO2i(x)
}
private static void AddXyIfInRange(double x, double y, Action<XyPoint> set)
{
var xyPoint = new XyPoint(x, y);
if (xyPoint.YIsInRange(-20.0, 50.0))
set(xyPoint);
}
private static void Set(CurveParamSet paramSet, CntrlComparisonFittingInfo fittingInfo)
{
var xyPoint1 = new XyPoint(fittingInfo.PCO2c, fittingInfo.AnetMeas); // AnetMeas(y), PCO2c(x)
var xyPoint2 = new XyPoint(fittingInfo.PCO2i, fittingInfo.AnetMeas);
switch (fittingInfo.PointLimitType)
{
case 1:
paramSet.AnetMeasChloro1Data.Add(xyPoint1);
paramSet.AnetMeasInter1Data.Add(xyPoint2);
break;
case 2:
paramSet.AnetMeasChloro2Data.Add(xyPoint1);
paramSet.AnetMeasInter2Data.Add(xyPoint2);
break;
case 3:
paramSet.AnetMeasChloro3Data.Add(xyPoint1);
paramSet.AnetMeasInter3Data.Add(xyPoint2);
break;
}
}
}
}
-145
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@@ -1,6 +1,4 @@
using System.Collections.Generic; using System.Collections.Generic;
using System.IO;
using LeafWeb.Core.Utility;
namespace LeafWeb.Core.Charter namespace LeafWeb.Core.Charter
{ {
@@ -19,148 +17,5 @@ namespace LeafWeb.Core.Charter
public List<XyPoint> AcInterData { get; } = new List<XyPoint>(); public List<XyPoint> AcInterData { get; } = new List<XyPoint>();
public List<XyPoint> AjInterData { get; } = new List<XyPoint>(); public List<XyPoint> AjInterData { get; } = new List<XyPoint>();
public List<XyPoint> AtInterData { get; } = new List<XyPoint>(); public List<XyPoint> AtInterData { get; } = new List<XyPoint>();
public CurveParamSet(TextReader sr, ref int lineNbr, ref string curveId)
{
bool curveIdSet = false, doneWithAnet = false;
string line;
List<string> phrases;
while (!doneWithAnet)
{
lineNbr++;
line = sr.ReadLine();
if (line == null)
{
throw new ParseException("Unexpected end-of-file at line " + lineNbr);
}
phrases = SplitCsvLine(line);
var firstField = phrases[0];
if (firstField.Equals("CO2i"))
{
doneWithAnet = true;
}
else
{
// The fields on the line:
// Column Name
// 0 CurveID
// 1 ChlFlUse
// 2 FitGi
// 3 FitGamma
// 4 FitKco
// 5 FitRd
// 6 FitAlpha
// 7 LimitCombina
// 8 PCO2i
// 9 PCO2c
// 10 AnetMeas
// 11 AnetCal
// 12 weitedrms
// 13 PointLimitType
if (!curveIdSet)
{
curveId = firstField;
curveIdSet = true;
}
var xyPoint1 = new XyPoint(phrases[9], phrases[10]); // AnetMeas(y), PCO2c(x)
var xyPoint2 = new XyPoint(phrases[8], phrases[10]);
var pointLimitType = int.Parse(phrases[13]);
switch (pointLimitType)
{
case 1:
AnetMeasChloro1Data.Add(xyPoint1);
AnetMeasInter1Data.Add(xyPoint2);
break;
case 2:
AnetMeasChloro2Data.Add(xyPoint1);
AnetMeasInter2Data.Add(xyPoint2);
break;
case 3:
AnetMeasChloro3Data.Add(xyPoint1);
AnetMeasInter3Data.Add(xyPoint2);
break;
}
}
}
// The next set of lines will have three pairs of x,y-coordinates to save.
// A blank line signals the end of the data.
var moreData = true;
while (moreData)
{
// The fields on the line:
// Column Name
// 0 CO2i
// 1 CO2cc
// 2 Ac
// 3 CO2cj
// 4 Aj
// 5 CO2ct
// 6 At
lineNbr++;
line = sr.ReadLine();
if (line == null)
{
throw new ParseException("Unexpected end-of-file at line " + lineNbr);
}
if (line.Length == 0)
moreData = false;
else
{
phrases = SplitCsvLine(line);
var xyPoint1 = new XyPoint(phrases[1],phrases[2]); // Ac(y),CO2cc(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AcChloroData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[3], phrases[4]); // Aj(y),CO2cj(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AjChloroData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[5], phrases[6]); // At(y),CO2ct(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AtChloroData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[0], phrases[2]); // Ac(y),CO2i(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AcInterData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[0], phrases[4]); // Aj(y),CO2i(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AjInterData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[0], phrases[6]); // At(y),CO2i(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AtInterData.Add(xyPoint1);
}
}
}
/// <summary>
/// This method assumes that the argument is a comma-, blank-, or
/// tab-separated set of strings. It returns an ArrayList of those
/// quantities. Consecutive commas will be returned as an empty string,
/// but all empty strings at the end of the line will be thrown away.
/// </summary>
/// <param name="line"></param>
/// <returns></returns>
private static List<string> SplitCsvLine(string line)
{
int i;
var separator = new [] {',', ' ', '\t'};
var phrases = line.Split(separator);
var retPhrases = new List<string>();
for (i = 0; i < phrases.Length; i++)
{
var phrase = phrases[i].Trim();
if (phrase.Length > 0)
retPhrases.Add(phrase);
}
return retPhrases;
}
} }
} }
+6 -6
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@@ -2,16 +2,16 @@
{ {
public class XyPoint public class XyPoint
{ {
public XyPoint(string x, string y)
{
X = double.Parse(x);
Y = double.Parse(y);
}
public double X { get; private set; } public double X { get; private set; }
public double Y { get; private set; } public double Y { get; private set; }
public XyPoint(double x, double y)
{
X = x;
Y = y;
}
public bool YIsInRange(double lowEnd, double highEnd) public bool YIsInRange(double lowEnd, double highEnd)
{ {
return (Y >= lowEnd) && (Y <= highEnd); return (Y >= lowEnd) && (Y <= highEnd);
+37
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@@ -0,0 +1,37 @@
using System.IO;
namespace LeafWeb.Core.CharterOld
{
public class CurveData
{
private readonly string _curveId;
public string CurveId => _curveId;
// 1
public CurveParamSet FixedCndFixedCmp { get; }
// 2
public CurveParamSet FixedCndEstimatedCmp { get; }
// 3
public CurveParamSet EstimatedCndFixedCmp { get; }
// 4
public CurveParamSet EstimatedCndEstimatedCmp { get; }
public CurveData(TextReader sr, ref int lineNbr)
{
// For each curve in the output file there are four sets of data.
FixedCndFixedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
FixedCndEstimatedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
EstimatedCndFixedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
EstimatedCndEstimatedCmp = new CurveParamSet(sr, ref lineNbr, ref _curveId);
}
}
}
@@ -1,7 +1,7 @@
using System.Collections.Generic; using System.Collections.Generic;
using System.IO; using System.IO;
namespace LeafWeb.Core.Charter namespace LeafWeb.Core.CharterOld
{ {
public class CurveDataList public class CurveDataList
{ {
+166
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@@ -0,0 +1,166 @@
using System.Collections.Generic;
using System.IO;
using LeafWeb.Core.Utility;
namespace LeafWeb.Core.CharterOld
{
public class CurveParamSet
{
public List<XyPoint> AnetMeasChloro1Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2c, for PointLimitType=1
public List<XyPoint> AnetMeasChloro2Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2c, for PointLimitType=2
public List<XyPoint> AnetMeasChloro3Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2c, for PointLimitType=3
public List<XyPoint> AnetMeasInter1Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2i, for PointLimitType=1
public List<XyPoint> AnetMeasInter2Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2i, for PointLimitType=2
public List<XyPoint> AnetMeasInter3Data { get; } = new List<XyPoint>(); // y=AnetMeas column, x=PCO2i, for PointLimitType=3
public List<XyPoint> AcChloroData { get; } = new List<XyPoint>();
public List<XyPoint> AjChloroData { get; } = new List<XyPoint>();
public List<XyPoint> AtChloroData { get; } = new List<XyPoint>();
public List<XyPoint> AcInterData { get; } = new List<XyPoint>();
public List<XyPoint> AjInterData { get; } = new List<XyPoint>();
public List<XyPoint> AtInterData { get; } = new List<XyPoint>();
public CurveParamSet(TextReader sr, ref int lineNbr, ref string curveId)
{
bool curveIdSet = false, doneWithAnet = false;
string line;
List<string> phrases;
while (!doneWithAnet)
{
lineNbr++;
line = sr.ReadLine();
if (line == null)
{
throw new ParseException("Unexpected end-of-file at line " + lineNbr);
}
phrases = SplitCsvLine(line);
var firstField = phrases[0];
if (firstField.Equals("CO2i"))
{
doneWithAnet = true;
}
else
{
// The fields on the line:
// Column Name
// 0 CurveID
// 1 ChlFlUse
// 2 FitGi
// 3 FitGamma
// 4 FitKco
// 5 FitRd
// 6 FitAlpha
// 7 LimitCombina
// 8 PCO2i
// 9 PCO2c
// 10 AnetMeas
// 11 AnetCal
// 12 weitedrms
// 13 PointLimitType
if (!curveIdSet)
{
curveId = firstField;
curveIdSet = true;
}
var xyPoint1 = new XyPoint(phrases[9], phrases[10]); // AnetMeas(y), PCO2c(x)
var xyPoint2 = new XyPoint(phrases[8], phrases[10]);
var pointLimitType = int.Parse(phrases[13]);
switch (pointLimitType)
{
case 1:
AnetMeasChloro1Data.Add(xyPoint1);
AnetMeasInter1Data.Add(xyPoint2);
break;
case 2:
AnetMeasChloro2Data.Add(xyPoint1);
AnetMeasInter2Data.Add(xyPoint2);
break;
case 3:
AnetMeasChloro3Data.Add(xyPoint1);
AnetMeasInter3Data.Add(xyPoint2);
break;
}
}
}
// The next set of lines will have three pairs of x,y-coordinates to save.
// A blank line signals the end of the data.
var moreData = true;
while (moreData)
{
// The fields on the line:
// Column Name
// 0 CO2i
// 1 CO2cc
// 2 Ac
// 3 CO2cj
// 4 Aj
// 5 CO2ct
// 6 At
lineNbr++;
line = sr.ReadLine();
if (line == null)
{
throw new ParseException("Unexpected end-of-file at line " + lineNbr);
}
if (line.Length == 0)
moreData = false;
else
{
phrases = SplitCsvLine(line);
var xyPoint1 = new XyPoint(phrases[1],phrases[2]); // Ac(y),CO2cc(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AcChloroData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[3], phrases[4]); // Aj(y),CO2cj(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AjChloroData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[5], phrases[6]); // At(y),CO2ct(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AtChloroData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[0], phrases[2]); // Ac(y),CO2i(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AcInterData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[0], phrases[4]); // Aj(y),CO2i(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AjInterData.Add(xyPoint1);
xyPoint1 = new XyPoint(phrases[0], phrases[6]); // At(y),CO2i(x)
if (xyPoint1.YIsInRange(-20.0, 50.0))
AtInterData.Add(xyPoint1);
}
}
}
/// <summary>
/// This method assumes that the argument is a comma-, blank-, or
/// tab-separated set of strings. It returns an ArrayList of those
/// quantities. Consecutive commas will be returned as an empty string,
/// but all empty strings at the end of the line will be thrown away.
/// </summary>
/// <param name="line"></param>
/// <returns></returns>
private static List<string> SplitCsvLine(string line)
{
int i;
var separator = new [] {',', ' ', '\t'};
var phrases = line.Split(separator);
var retPhrases = new List<string>();
for (i = 0; i < phrases.Length; i++)
{
var phrase = phrases[i].Trim();
if (phrase.Length > 0)
retPhrases.Add(phrase);
}
return retPhrases;
}
}
}
+20
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@@ -0,0 +1,20 @@
namespace LeafWeb.Core.CharterOld
{
public class XyPoint
{
public XyPoint(string x, string y)
{
X = double.Parse(x);
Y = double.Parse(y);
}
public double X { get; private set; }
public double Y { get; private set; }
public bool YIsInRange(double lowEnd, double highEnd)
{
return (Y >= lowEnd) && (Y <= highEnd);
}
}
}
+9 -4
View File
@@ -56,18 +56,22 @@
<Reference Include="System.Xml" /> <Reference Include="System.Xml" />
</ItemGroup> </ItemGroup>
<ItemGroup> <ItemGroup>
<Compile Include="Charter\CurveData.cs" />
<Compile Include="Charter\CurveDataConverter.cs" />
<Compile Include="Charter\CurveParamSet.cs" />
<Compile Include="Charter\XYPoint.cs" />
<Compile Include="Models\CntrlComparison.cs" /> <Compile Include="Models\CntrlComparison.cs" />
<Compile Include="Models\CntrlComparisonFittingInfo.cs" /> <Compile Include="Models\CntrlComparisonFittingInfo.cs" />
<Compile Include="Models\CntrlComparisonPhotosyntheticInfo.cs" /> <Compile Include="Models\CntrlComparisonPhotosyntheticInfo.cs" />
<Compile Include="Charter\CurveDataList.cs" /> <Compile Include="CharterOld\CurveDataList.cs" />
<Compile Include="Charter\CurveData.cs" /> <Compile Include="CharterOld\CurveData.cs" />
<Compile Include="Charter\CurveParamSet.cs" /> <Compile Include="CharterOld\CurveParamSet.cs" />
<Compile Include="Models\LeafInput.cs" /> <Compile Include="Models\LeafInput.cs" />
<Compile Include="Models\LeafInputData.cs" /> <Compile Include="Models\LeafInputData.cs" />
<Compile Include="Models\LeafInputFile.cs" /> <Compile Include="Models\LeafInputFile.cs" />
<Compile Include="Models\LeafInputPhotosynthetic.cs" /> <Compile Include="Models\LeafInputPhotosynthetic.cs" />
<Compile Include="Models\LeafInputSite.cs" /> <Compile Include="Models\LeafInputSite.cs" />
<Compile Include="Charter\XYPoint.cs" /> <Compile Include="CharterOld\XYPoint.cs" />
<Compile Include="Utility\BoolTypeConverter.cs" /> <Compile Include="Utility\BoolTypeConverter.cs" />
<Compile Include="Parsers\CntrlComparisonParser.cs" /> <Compile Include="Parsers\CntrlComparisonParser.cs" />
<Compile Include="Parsers\CsvParserBase.cs" /> <Compile Include="Parsers\CsvParserBase.cs" />
@@ -76,6 +80,7 @@
<Compile Include="Parsers\LeafInputCsvParser.cs" /> <Compile Include="Parsers\LeafInputCsvParser.cs" />
<Compile Include="Utility\ParsedObjectFactory.cs" /> <Compile Include="Utility\ParsedObjectFactory.cs" />
<Compile Include="Utility\ParseException.cs" /> <Compile Include="Utility\ParseException.cs" />
<Compile Include="Utility\ReflectionExtensions.cs" />
<Compile Include="Utility\StringExtensions.cs" /> <Compile Include="Utility\StringExtensions.cs" />
</ItemGroup> </ItemGroup>
<ItemGroup> <ItemGroup>
+7 -1
View File
@@ -1,5 +1,5 @@
using System.Collections.Generic; using System.Collections.Generic;
using System.ComponentModel.DataAnnotations; using System.Linq;
namespace LeafWeb.Core.Models namespace LeafWeb.Core.Models
{ {
@@ -11,5 +11,11 @@ namespace LeafWeb.Core.Models
{ {
public virtual IEnumerable<CntrlComparisonFittingInfo> FittingInfo { get; set; } public virtual IEnumerable<CntrlComparisonFittingInfo> FittingInfo { get; set; }
public virtual IEnumerable<CntrlComparisonPhotosyntheticInfo> PhotosyntheticInfo { get; set; } public virtual IEnumerable<CntrlComparisonPhotosyntheticInfo> PhotosyntheticInfo { get; set; }
public string CurveID => FittingInfo.First().CurveID;
public bool FitGi => FittingInfo.First().FitGi;
public bool FitGammaStar => FittingInfo.First().FitGammaStar;
} }
} }
+46
View File
@@ -0,0 +1,46 @@
using System;
using System.ComponentModel;
using System.Diagnostics;
using System.Linq;
using System.Linq.Expressions;
using System.Reflection;
using Fasterflect;
namespace LeafWeb.Core.Utility
{
public static class ReflectionExtensions
{
public static string GetPropertyDisplayName<T>(Expression<Func<T, object>> propertyExpression)
{
var memberInfo = GetPropertyInformation(propertyExpression.Body);
if (memberInfo == null)
{
throw new ArgumentException("No property reference expression was found.", nameof(propertyExpression));
}
var attr = memberInfo.Attributes<DisplayNameAttribute>().SingleOrDefault();
return attr == null ? memberInfo.Name : attr.DisplayName;
}
public static MemberInfo GetPropertyInformation(Expression propertyExpression)
{
Debug.Assert(propertyExpression != null, "propertyExpression != null");
var memberExpr = propertyExpression as MemberExpression;
if (memberExpr == null)
{
var unaryExpr = propertyExpression as UnaryExpression;
if (unaryExpr != null && unaryExpr.NodeType == ExpressionType.Convert)
{
memberExpr = unaryExpr.Operand as MemberExpression;
}
}
if (memberExpr != null && memberExpr.Member.MemberType == MemberTypes.Property)
{
return memberExpr.Member;
}
return null;
}
}
}
+6 -1
View File
@@ -1,6 +1,8 @@
Microsoft Visual Studio Solution File, Format Version 12.00 Microsoft Visual Studio Solution File, Format Version 12.00
# Visual Studio 2012 # Visual Studio 14
VisualStudioVersion = 14.0.23107.0
MinimumVisualStudioVersion = 10.0.40219.1
Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Web", "Web\Web.csproj", "{0809033D-DBB9-41AE-8811-9A9CFDFD8966}" Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Web", "Web\Web.csproj", "{0809033D-DBB9-41AE-8811-9A9CFDFD8966}"
EndProject EndProject
Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Web.Tests", "Web.Tests\Web.Tests.csproj", "{0DBE7CB9-71B3-46BA-8045-0F1E36C1C8F7}" Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Web.Tests", "Web.Tests\Web.Tests.csproj", "{0DBE7CB9-71B3-46BA-8045-0F1E36C1C8F7}"
@@ -10,6 +12,9 @@ EndProject
Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Core.Tests", "Core.Tests\Core.Tests.csproj", "{8207F6FE-EA80-41CA-81B5-ACD020FB0F3C}" Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "Core.Tests", "Core.Tests\Core.Tests.csproj", "{8207F6FE-EA80-41CA-81B5-ACD020FB0F3C}"
EndProject EndProject
Global Global
GlobalSection(Performance) = preSolution
HasPerformanceSessions = true
EndGlobalSection
GlobalSection(SolutionConfigurationPlatforms) = preSolution GlobalSection(SolutionConfigurationPlatforms) = preSolution
Debug|Any CPU = Debug|Any CPU Debug|Any CPU = Debug|Any CPU
Release|Any CPU = Release|Any CPU Release|Any CPU = Release|Any CPU
+35 -60
View File
@@ -10,22 +10,19 @@ namespace LeafWeb.Web.Charter
public static class LeafWebCharter public static class LeafWebCharter
{ {
// cntrlcomparison // cntrlcomparison
public static IEnumerable<Chart> ProduceCharts(List<CurveData> curveData) public static IEnumerable<Chart> ProduceCharts(CurveData curve)
{ {
var curve = curveData[1]; // TODO: why is only the [1] used?
var curveId = curve.CurveId; var curveId = curve.CurveId;
var fcfc = CurveSeries(curveId, curve.FixedCndFixedCmp, var paramTitles = new[]
"Internal conductance fixed, compensation point and M-M constants fixed"); {
var fcec = CurveSeries(curveId, curve.FixedCndEstimatedCmp, new {param = curve.FixedCndFixedCmp, title = "Internal conductance fixed, compensation point and M-M constants fixed" },
"Internal conductance fixed, compensation point and M-M constants estimated"); new {param = curve.FixedCndEstimatedCmp, title = "Internal conductance fixed, compensation point and M-M constants estimated" },
var ecfc = CurveSeries(curveId, curve.EstimatedCndFixedCmp, new {param = curve.EstimatedCndFixedCmp, title = "Internal conductance estimated, compensation point and M-M constants fixed" },
"Internal conductance estimated, compensation point and M-M constants fixed"); new {param = curve.EstimatedCndEstimatedCmp,title = "Internal conductance estimated, compensation point and M-M constants estimated" },
var ecec = CurveSeries(curveId, curve.EstimatedCndEstimatedCmp, };
"Internal conductance estimated, compensation point and M-M constants estimated");
return new[] {fcfc, fcec, ecfc, ecec}.SelectMany(c => c); return paramTitles.SelectMany(item => CurveSeries(curveId, item.param, item.title));
} }
private static IEnumerable<Chart> CurveSeries(string curveId, CurveParamSet paramSet, string chartTitle) private static IEnumerable<Chart> CurveSeries(string curveId, CurveParamSet paramSet, string chartTitle)
@@ -33,54 +30,36 @@ namespace LeafWeb.Web.Charter
var chloroChart = GetChart("Chloroplastic CO2 partial pressure (Pa)"); var chloroChart = GetChart("Chloroplastic CO2 partial pressure (Pa)");
var interChart = GetChart("Intercellular CO2 partial pressure (Pa)"); var interChart = GetChart("Intercellular CO2 partial pressure (Pa)");
var anetMeasChloro1 = paramSet.AnetMeasChloro1Data;
var anetMeasChloro2 = paramSet.AnetMeasChloro2Data;
var anetMeasChloro3 = paramSet.AnetMeasChloro3Data;
// Set the points for the symbol series for paramater set 1, chloroplastic // Set the points for the symbol series for paramater set 1, chloroplastic
SetAnetMeasPoints(anetMeasChloro1, chloroChart.Series["Rubisco-limited"]); SetAnetMeasPoints(paramSet.AnetMeasChloro1Data, chloroChart.Series["Rubisco-limited"]);
SetAnetMeasPoints(anetMeasChloro2, chloroChart.Series["RuBP regeneration-limited"]); SetAnetMeasPoints(paramSet.AnetMeasChloro2Data, chloroChart.Series["RuBP regeneration-limited"]);
var tpuSeries = NewTpuSeries(anetMeasChloro3); var tpuSeries = NewTpuSeries(paramSet.AnetMeasChloro3Data);
SetAnetMeasPoints(anetMeasChloro3, tpuSeries); SetAnetMeasPoints(paramSet.AnetMeasChloro3Data, tpuSeries);
chloroChart.Series.Add(tpuSeries); chloroChart.Series.Add(tpuSeries);
var anetMeasInter1 = paramSet.AnetMeasInter1Data;
var anetMeasInter2 = paramSet.AnetMeasInter2Data;
var anetMeasInter3 = paramSet.AnetMeasInter3Data;
// Set the points for the symbol series for paramater set 1, intercellular // Set the points for the symbol series for paramater set 1, intercellular
SetAnetMeasPoints(anetMeasInter1, interChart.Series["Rubisco-limited"]); SetAnetMeasPoints(paramSet.AnetMeasInter1Data, interChart.Series["Rubisco-limited"]);
SetAnetMeasPoints(anetMeasInter2, interChart.Series["RuBP regeneration-limited"]); SetAnetMeasPoints(paramSet.AnetMeasInter2Data, interChart.Series["RuBP regeneration-limited"]);
tpuSeries = NewTpuSeries(anetMeasInter3); tpuSeries = NewTpuSeries(paramSet.AnetMeasInter3Data);
SetAnetMeasPoints(anetMeasInter3, tpuSeries); SetAnetMeasPoints(paramSet.AnetMeasInter3Data, tpuSeries);
interChart.Series.Add(tpuSeries); interChart.Series.Add(tpuSeries);
var acChloroList = paramSet.AcChloroData;
var ajChloroList = paramSet.AjChloroData;
var atChloroList = paramSet.AtChloroData;
// Set the points on the asymptote curve for parameter set 1, chloroplast // Set the points on the asymptote curve for parameter set 1, chloroplast
SetAsymptotePoints(acChloroList, chloroChart.Series["acCurve"]); SetAsymptotePoints(paramSet.AcChloroData, chloroChart.Series["acCurve"]);
SetAsymptotePoints(ajChloroList, chloroChart.Series["ajCurve"]); SetAsymptotePoints(paramSet.AjChloroData, chloroChart.Series["ajCurve"]);
SetAsymptotePoints(atChloroList, chloroChart.Series["atCurve"]); SetAsymptotePoints(paramSet.AtChloroData, chloroChart.Series["atCurve"]);
var acInterList = paramSet.AcInterData;
var ajInterList = paramSet.AjInterData;
var atInterList = paramSet.AtInterData;
// Set the points on the asymptote curve for parameter set 1, intercellular // Set the points on the asymptote curve for parameter set 1, intercellular
SetAsymptotePoints(acInterList, interChart.Series["acCurve"]); SetAsymptotePoints(paramSet.AcInterData, interChart.Series["acCurve"]);
SetAsymptotePoints(ajInterList, interChart.Series["ajCurve"]); SetAsymptotePoints(paramSet.AjInterData, interChart.Series["ajCurve"]);
SetAsymptotePoints(atInterList, interChart.Series["atCurve"]); SetAsymptotePoints(paramSet.AtInterData, interChart.Series["atCurve"]);
var axisFont = new Font("Times New Roman", 12, FontStyle.Bold); var axisFont = new Font("Times New Roman", 12, FontStyle.Bold);
var titleFont = new Font("Times New Roman", 12, FontStyle.Bold); var titleFont = new Font("Times New Roman", 12, FontStyle.Bold);
var title = new Title("LeafWeb curveID = " + curveId + var title = new Title($"LeafWeb curveID = {curveId}\n{chartTitle}"){Font = titleFont};
"\n" + chartTitle)
{Font = titleFont};
chloroChart.Titles.Add(title); chloroChart.Titles.Add(title);
interChart.Titles.Add(title); interChart.Titles.Add(title);
@@ -89,6 +68,7 @@ namespace LeafWeb.Web.Charter
interChart.ChartAreas["ChartArea1"].AxisX.TitleFont = axisFont; interChart.ChartAreas["ChartArea1"].AxisX.TitleFont = axisFont;
interChart.ChartAreas["ChartArea1"].AxisY.TitleFont = axisFont; interChart.ChartAreas["ChartArea1"].AxisY.TitleFont = axisFont;
yield return chloroChart; yield return chloroChart;
yield return interChart; yield return interChart;
} }
@@ -196,7 +176,7 @@ namespace LeafWeb.Web.Charter
} }
}); });
var rubiscoLimited = new Series chart.Series.Add(new Series
{ {
MarkerSize = 8, MarkerSize = 8,
BorderWidth = 3, BorderWidth = 3,
@@ -209,10 +189,9 @@ namespace LeafWeb.Web.Charter
Color = Color.Red, Color = Color.Red,
ShadowOffset = 0, ShadowOffset = 0,
YValueType = ChartValueType.Double YValueType = ChartValueType.Double
}; });
chart.Series.Add(rubiscoLimited);
var rubpRegenerationLimited = new Series chart.Series.Add(new Series
{ {
MarkerSize = 9, MarkerSize = 9,
BorderWidth = 3, BorderWidth = 3,
@@ -225,10 +204,9 @@ namespace LeafWeb.Web.Charter
Color = Color.Blue, Color = Color.Blue,
ShadowOffset = 0, ShadowOffset = 0,
YValueType = ChartValueType.Double YValueType = ChartValueType.Double
}; });
chart.Series.Add(rubpRegenerationLimited);
var acCurve = new Series chart.Series.Add(new Series
{ {
MarkerSize = 2, MarkerSize = 2,
BorderWidth = 1, BorderWidth = 1,
@@ -242,10 +220,9 @@ namespace LeafWeb.Web.Charter
ShadowOffset = 0, ShadowOffset = 0,
YValueType = ChartValueType.Double, YValueType = ChartValueType.Double,
IsVisibleInLegend = false IsVisibleInLegend = false
}; });
chart.Series.Add(acCurve);
var ajCurve = new Series chart.Series.Add(new Series
{ {
MarkerSize = 2, MarkerSize = 2,
BorderWidth = 1, BorderWidth = 1,
@@ -259,10 +236,9 @@ namespace LeafWeb.Web.Charter
ShadowOffset = 0, ShadowOffset = 0,
YValueType = ChartValueType.Double, YValueType = ChartValueType.Double,
IsVisibleInLegend = false IsVisibleInLegend = false
}; });
chart.Series.Add(ajCurve);
var atCurve = new Series chart.Series.Add(new Series
{ {
MarkerSize = 2, MarkerSize = 2,
BorderWidth = 1, BorderWidth = 1,
@@ -276,8 +252,7 @@ namespace LeafWeb.Web.Charter
ShadowOffset = 0, ShadowOffset = 0,
YValueType = ChartValueType.Double, YValueType = ChartValueType.Double,
IsVisibleInLegend = false IsVisibleInLegend = false
}; });
chart.Series.Add(atCurve);
return chart; return chart;
} }
+262
View File
@@ -0,0 +1,262 @@
using System.Collections.Generic;
using System.Drawing;
using System.Linq;
using System.Web.UI.DataVisualization.Charting;
using System.Web.UI.WebControls;
using CurveData = LeafWeb.Core.CharterOld.CurveData;
using CurveParamSet = LeafWeb.Core.CharterOld.CurveParamSet;
using XyPoint = LeafWeb.Core.CharterOld.XyPoint;
namespace LeafWeb.Web.Charter
{
public static class LeafWebCharterOld
{
// cntrlcomparison
public static IEnumerable<Chart> ProduceCharts(CurveData curve)
{
var curveId = curve.CurveId;
var paramTitles = new[]
{
new {param = curve.FixedCndFixedCmp, title = "Internal conductance fixed, compensation point and M-M constants fixed" },
new {param = curve.FixedCndEstimatedCmp, title = "Internal conductance fixed, compensation point and M-M constants estimated" },
new {param = curve.EstimatedCndFixedCmp, title = "Internal conductance estimated, compensation point and M-M constants fixed" },
new {param = curve.EstimatedCndEstimatedCmp,title = "Internal conductance estimated, compensation point and M-M constants estimated" },
};
return paramTitles.SelectMany(item => CurveSeries(curveId, item.param, item.title));
}
private static IEnumerable<Chart> CurveSeries(string curveId, CurveParamSet paramSet, string chartTitle)
{
var chloroChart = GetChart("Chloroplastic CO2 partial pressure (Pa)");
var interChart = GetChart("Intercellular CO2 partial pressure (Pa)");
// Set the points for the symbol series for paramater set 1, chloroplastic
SetAnetMeasPoints(paramSet.AnetMeasChloro1Data, chloroChart.Series["Rubisco-limited"]);
SetAnetMeasPoints(paramSet.AnetMeasChloro2Data, chloroChart.Series["RuBP regeneration-limited"]);
var tpuSeries = NewTpuSeries(paramSet.AnetMeasChloro3Data);
SetAnetMeasPoints(paramSet.AnetMeasChloro3Data, tpuSeries);
chloroChart.Series.Add(tpuSeries);
// Set the points for the symbol series for paramater set 1, intercellular
SetAnetMeasPoints(paramSet.AnetMeasInter1Data, interChart.Series["Rubisco-limited"]);
SetAnetMeasPoints(paramSet.AnetMeasInter2Data, interChart.Series["RuBP regeneration-limited"]);
tpuSeries = NewTpuSeries(paramSet.AnetMeasInter3Data);
SetAnetMeasPoints(paramSet.AnetMeasInter3Data, tpuSeries);
interChart.Series.Add(tpuSeries);
// Set the points on the asymptote curve for parameter set 1, chloroplast
SetAsymptotePoints(paramSet.AcChloroData, chloroChart.Series["acCurve"]);
SetAsymptotePoints(paramSet.AjChloroData, chloroChart.Series["ajCurve"]);
SetAsymptotePoints(paramSet.AtChloroData, chloroChart.Series["atCurve"]);
// Set the points on the asymptote curve for parameter set 1, intercellular
SetAsymptotePoints(paramSet.AcInterData, interChart.Series["acCurve"]);
SetAsymptotePoints(paramSet.AjInterData, interChart.Series["ajCurve"]);
SetAsymptotePoints(paramSet.AtInterData, interChart.Series["atCurve"]);
var axisFont = new Font("Times New Roman", 12, FontStyle.Bold);
var titleFont = new Font("Times New Roman", 12, FontStyle.Bold);
var title = new Title($"LeafWeb curveID = {curveId}\n{chartTitle}"){Font = titleFont};
chloroChart.Titles.Add(title);
interChart.Titles.Add(title);
chloroChart.ChartAreas["ChartArea1"].AxisX.TitleFont = axisFont;
chloroChart.ChartAreas["ChartArea1"].AxisY.TitleFont = axisFont;
interChart.ChartAreas["ChartArea1"].AxisX.TitleFont = axisFont;
interChart.ChartAreas["ChartArea1"].AxisY.TitleFont = axisFont;
yield return chloroChart;
yield return interChart;
}
private static Series NewTpuSeries(IReadOnlyCollection<XyPoint> data)
{
var seriesName = "TPU-limited";
if (data.Count == 0)
seriesName = "Curve Asymptote";
var series3 = new Series(seriesName)
{
MarkerSize = 9,
BorderWidth = 3,
XValueType = ChartValueType.Double,
ChartType = SeriesChartType.Point,
MarkerStyle = MarkerStyle.Square,
ShadowColor = Color.Black,
BorderColor = Color.Black,
Color = Color.Orange,
ShadowOffset = 0,
YValueType = ChartValueType.Double
};
return series3;
}
private static void SetAnetMeasPoints(List<XyPoint> data, Series series)
{
// Set the points for the series from the ArrayList
foreach (var xy in data)
{
series.Points.AddXY(xy.X, xy.Y);
}
}
private static void SetAsymptotePoints(List<XyPoint> data, Series series)
{
// Set the points for the series from the ArrayList
foreach (var xy in data)
{
if ((xy.X != -9999) && (xy.Y != -9999))
{
series.Points.AddXY(xy.X, xy.Y);
}
}
}
private static Chart GetChart(string axisXTitle, int width=700, int height=500)
{
var font = new Font(new FontFamily("Trebuchet MS"), 12, FontStyle.Bold);
var borderColor = Color.FromArgb(180, 26, 59, 105);
var chart = new Chart
{
BackColor = Color.White,
Width = Unit.Pixel(width),
Height = Unit.Pixel(height),
BorderSkin = {SkinStyle = BorderSkinStyle.Emboss},
BorderColor = borderColor
};
chart.Legends.Add(new Legend
{
Enabled = true,
IsTextAutoFit = false,
Name = "Default",
Docking = Docking.Bottom,
BackColor = Color.Transparent,
Font = font
});
chart.ChartAreas.Add(new ChartArea
{
Name = "ChartArea1",
BorderColor = Color.FromArgb(64, 64, 64, 64),
BorderDashStyle = ChartDashStyle.Solid,
BackSecondaryColor = Color.White,
BackColor = Color.OldLace,
ShadowColor = Color.Transparent,
BackGradientStyle = GradientStyle.TopBottom,
Area3DStyle = new ChartArea3DStyle
{
Rotation = 25,
Perspective = 9,
LightStyle = LightStyle.Realistic,
Inclination = 40,
IsRightAngleAxes = false,
WallWidth = 3,
IsClustered = false
},
AxisY = new Axis
{
LineColor = Color.FromArgb(64, 64, 64, 64),
Title = "Net assimilation rate (umol/m2/s)",
LabelStyle = {Font = font},
MajorGrid = new Grid {LineColor = Color.FromArgb(64, 64, 64, 64)}
},
AxisX = new Axis
{
LineColor = Color.FromArgb(64, 64, 64, 64),
Minimum = 0,
Title = axisXTitle,
LabelStyle = {Font = font},
MajorGrid = new Grid {LineColor = Color.FromArgb(64, 64, 64, 64)}
}
});
chart.Series.Add(new Series
{
MarkerSize = 8,
BorderWidth = 3,
XValueType = ChartValueType.Double,
Name = "Rubisco-limited",
ChartType = SeriesChartType.Point,
MarkerStyle = MarkerStyle.Diamond,
ShadowColor = Color.Black,
BorderColor = borderColor,
Color = Color.Red,
ShadowOffset = 0,
YValueType = ChartValueType.Double
});
chart.Series.Add(new Series
{
MarkerSize = 9,
BorderWidth = 3,
XValueType = ChartValueType.Double,
Name = "RuBP regeneration-limited",
ChartType = SeriesChartType.Point,
MarkerStyle = MarkerStyle.Circle,
ShadowColor = Color.Black,
BorderColor = borderColor,
Color = Color.Blue,
ShadowOffset = 0,
YValueType = ChartValueType.Double
});
chart.Series.Add(new Series
{
MarkerSize = 2,
BorderWidth = 1,
XValueType = ChartValueType.Double,
Name = "acCurve",
ChartType = SeriesChartType.Line,
MarkerStyle = MarkerStyle.None,
ShadowColor = Color.Black,
BorderColor = borderColor,
Color = Color.Red,
ShadowOffset = 0,
YValueType = ChartValueType.Double,
IsVisibleInLegend = false
});
chart.Series.Add(new Series
{
MarkerSize = 2,
BorderWidth = 1,
XValueType = ChartValueType.Double,
Name = "ajCurve",
ChartType = SeriesChartType.Line,
MarkerStyle = MarkerStyle.None,
ShadowColor = Color.Black,
BorderColor = borderColor,
Color = Color.Blue,
ShadowOffset = 0,
YValueType = ChartValueType.Double,
IsVisibleInLegend = false
});
chart.Series.Add(new Series
{
MarkerSize = 2,
BorderWidth = 1,
XValueType = ChartValueType.Double,
Name = "atCurve",
ChartType = SeriesChartType.Line,
MarkerStyle = MarkerStyle.None,
ShadowColor = Color.Black,
BorderColor = borderColor,
Color = Color.Orange,
ShadowOffset = 0,
YValueType = ChartValueType.Double,
IsVisibleInLegend = false
});
return chart;
}
}
}
+25 -3
View File
@@ -1,13 +1,14 @@
using System; using System;
using System.Collections.Generic;
using System.Drawing; using System.Drawing;
using System.IO; using System.IO;
using System.Linq; using System.Linq;
using System.Web;
using System.Web.Mvc; using System.Web.Mvc;
using System.Web.UI.DataVisualization.Charting; using System.Web.UI.DataVisualization.Charting;
using System.Web.UI.WebControls; using System.Web.UI.WebControls;
using LeafWeb.Core.Charter; using LeafWeb.Core.Charter;
using LeafWeb.Core.CharterOld;
using LeafWeb.Core.Models;
using LeafWeb.Core.Parsers;
using LeafWeb.Web.Charter; using LeafWeb.Web.Charter;
namespace LeafWeb.Web.Controllers namespace LeafWeb.Web.Controllers
@@ -20,6 +21,27 @@ namespace LeafWeb.Web.Controllers
} }
public ActionResult LeafCharts(int number) public ActionResult LeafCharts(int number)
{
var fileInfo = new FileInfo(@"C:\Users\poprhythm\Documents\code\LeafWeb\Core.Tests\Parsers\LeafOutputData\cntrlcomparison_Wild Capsicum.csv");
CntrlComparison[] cntrlComparison;
using (var parser = new CntrlComparisonParser(fileInfo))
cntrlComparison = parser.Parse();
var curveData = CurveDataConverter.Convert(cntrlComparison).ToArray();
var charts = LeafWebCharter.ProduceCharts(curveData[1]);
using (var ms = new MemoryStream())
{
charts.Skip(number).First().SaveImage(ms, ChartImageFormat.Png);
ms.Seek(0, SeekOrigin.Begin);
return File(ms.ToArray(), "image/png", "mychart.png");
}
}
public ActionResult LeafChartsOld(int number)
{ {
var fileInfo = new FileInfo(@"C:\Users\poprhythm\Documents\code\LeafWeb\Core.Tests\Parsers\LeafOutputData\cntrlcomparison_Wild Capsicum.csv"); var fileInfo = new FileInfo(@"C:\Users\poprhythm\Documents\code\LeafWeb\Core.Tests\Parsers\LeafOutputData\cntrlcomparison_Wild Capsicum.csv");
var curveDataList = new CurveDataList(); var curveDataList = new CurveDataList();
@@ -27,7 +49,7 @@ namespace LeafWeb.Web.Controllers
{ {
curveDataList.ReadFromStream(reader); curveDataList.ReadFromStream(reader);
} }
var charts = LeafWebCharter.ProduceCharts(curveDataList.CurveData); var charts = LeafWebCharterOld.ProduceCharts(curveDataList.CurveData[1]);
using (var ms = new MemoryStream()) using (var ms = new MemoryStream())
{ {
+1 -1
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@@ -1,4 +1,4 @@
/** /**
* @license AngularJS v1.4.7 * @license AngularJS v1.4.7
* (c) 2010-2015 Google, Inc. http://angularjs.org * (c) 2010-2015 Google, Inc. http://angularjs.org
* License: MIT * License: MIT
+2 -2
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@@ -1,8 +1,8 @@
<img src="@Url.Action("LeafCharts", new {number=0})" alt="image" /> <img src="@Url.Action("LeafCharts", new {number=0})" alt="image" />
<img src="@Url.Action("LeafCharts", new {number=1})" alt="image" /> @*<img src="@Url.Action("LeafCharts", new {number=1})" alt="image" />
<img src="@Url.Action("LeafCharts", new {number=2})" alt="image" /> <img src="@Url.Action("LeafCharts", new {number=2})" alt="image" />
<img src="@Url.Action("LeafCharts", new {number=3})" alt="image" /> <img src="@Url.Action("LeafCharts", new {number=3})" alt="image" />
<img src="@Url.Action("LeafCharts", new {number=4})" alt="image" /> <img src="@Url.Action("LeafCharts", new {number=4})" alt="image" />
<img src="@Url.Action("LeafCharts", new {number=5})" alt="image" /> <img src="@Url.Action("LeafCharts", new {number=5})" alt="image" />
<img src="@Url.Action("LeafCharts", new {number=6})" alt="image" /> <img src="@Url.Action("LeafCharts", new {number=6})" alt="image" />
<img src="@Url.Action("LeafCharts", new {number=7})" alt="image" /> <img src="@Url.Action("LeafCharts", new {number=7})" alt="image" />*@
+1
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@@ -143,6 +143,7 @@
<Compile Include="App_Start\BundleConfig.cs" /> <Compile Include="App_Start\BundleConfig.cs" />
<Compile Include="App_Start\RouteConfig.cs" /> <Compile Include="App_Start\RouteConfig.cs" />
<Compile Include="Charter\LeafWebCharter.cs" /> <Compile Include="Charter\LeafWebCharter.cs" />
<Compile Include="Charter\LeafWebCharterOld.cs" />
<Compile Include="Controllers\LeafCharterController.cs" /> <Compile Include="Controllers\LeafCharterController.cs" />
<Compile Include="Controllers\PagesController.cs" /> <Compile Include="Controllers\PagesController.cs" />
<Compile Include="Global.asax.cs"> <Compile Include="Global.asax.cs">
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