Organize Piscal Service items

Add nlog, PiscalQueueManager

	modified:   Core.Tests/Remote/PiscalSshClientTests.cs
	modified:   Core/DAL/DataService.cs
	modified:   Core/Remote/IPiscalClient.cs
	modified:   Core/Remote/PiscalSshClient.cs
	new file:   Web/Attributes/ActionLogAttribute.cs
	modified:   Web/Controllers/ControllerBase.cs
	modified:   Web/Controllers/LeafInputController.cs
	modified:   Web/Controllers/LeafOutputController.cs
	new file:   Web/NLog.config
	new file:   Web/NLog.xsd
	new file:   Web/Services/PiscalQueueManager.cs
	modified:   Web/Services/PiscalService.cs
	modified:   Web/Startup.cs
	modified:   Web/Web.csproj
	modified:   Web/packages.config

Ignore logs

Organize piscal queue manager

	modified:   Core/Entities/LeafInputFile.cs
	modified:   Web/Controllers/LeafInputController.cs
	renamed:    Web/Startup.cs -> Web/HangfireStartup.cs
	modified:   Web/Services/PiscalQueueManager.cs
	modified:   Web/Web.csproj

cleanup usings in leafinputcontroller

Core/DAL/DataService.cs

@@ -56,7 +56,7 @@ namespace LeafWeb.Core.DAL
 			_db.LeafInputs.Add(leafInput);
 			foreach (var leafInputFile in leafInput.Files)
 			{
-				SetLeafInputFileStatusNoUpdate(leafInputFile, LeafInputStatusType.Added);
+				SetLeafInputFileStatusNoUpdate(leafInputFile, LeafInputStatusType.Queued);
 			}
 			_db.SaveChanges();
 		}
@@ -104,14 +104,6 @@ namespace LeafWeb.Core.DAL
 			UpdateLeafInputFile(leafInputFile);
 		}
 
-		public LeafInputFile GetNextUnprocessedLeafInputFile()
-		{
-			return
-				(from file in GetLeafInputFiles(LeafInputStatusType.Added)
-				orderby file.Id ascending
-				select file).FirstOrDefault();
-		}
-
 		#endregion
 
 		#region Photosynthesis Types
@@ -127,5 +119,25 @@ namespace LeafWeb.Core.DAL
 		}
 
 		#endregion
+
+		#region LeafOutputFile
+
+		public void AddLeafOutputFile(LeafOutputFile leafOutput)
+		{
+			_db.LeafOutputFiles.Add(leafOutput);
+			_db.SaveChanges();
+		}
+
+		public IQueryable<LeafOutputFile> GetLeafOutputFiles()
+		{
+			return _db.LeafOutputFiles;
+		}
+
+		public LeafOutputFile GetLeafOutputFile(int id)
+		{
+			return _db.LeafOutputFiles.Find(id);
+		}
+
+		#endregion
 	}
 }

Core/Entities/LeafInputFile.cs

@@ -7,6 +7,10 @@ namespace LeafWeb.Core.Entities
 		public int Id { get; set; }
 
 		public virtual LeafInput LeafInput { get; set; }
+		public virtual ICollection<LeafOutputFile> LeafOutputFiles { get; set; }
+
+		public LeafInputStatusType CurrentStatus { get; set; }
+		public virtual ICollection<LeafInputFileStatus> StatusHistory { get; set; }
 
 		/// <summary>
 		/// Parsed values from the LeafInput used in LeafWeb for filtering/searching
@@ -17,7 +21,9 @@ namespace LeafWeb.Core.Entities
 		
 		public byte[] Contents { get; set; }
 
-		public LeafInputStatusType CurrentStatus { get; set; }
-		public virtual ICollection<LeafInputFileStatus> StatusHistory { get; set; }
+		public override string ToString()
+		{
+			return $"{Id}_{Filename}";
+		}
 	}
 }

Core/Entities/LeafInputStatusType.cs

@@ -2,9 +2,9 @@ namespace LeafWeb.Core.Entities
 {
 	public enum LeafInputStatusType
 	{
-		Added,
-		ProcessStarted,
-		ProcessCompleted,
-		ProcessError
+		Queued,
+		Running,
+		Complete,
+		Error
 	}
 }

Core/Remote/IPiscalClient.cs

@@ -4,8 +4,8 @@ namespace LeafWeb.Core.Remote
 {
 	public interface IPiscalClient
 	{
-		void SubmitLeafInputFile(PiscalLeafInputFile file);
-		PiscalStatus GetLeafInputStatus(PiscalLeafInputFile file);
+		void RunLeafInputFile(PiscalLeafInputFile file);
+		PiscalStatus GetLeafInputFileStatus(PiscalLeafInputFile file);
 		IEnumerable<PiscalLeafOutputFile> RetrieveLeafOutput(PiscalLeafInputFile file);
 	}
 }

Core/Remote/PiscalSshClient.cs

@@ -34,7 +34,7 @@ namespace LeafWeb.Core.Remote
 			return new ScpClient(_connectionInfo);
 		}
 
-		public void SubmitLeafInputFile(PiscalLeafInputFile file)
+		public void RunLeafInputFile(PiscalLeafInputFile file)
 		{
 			var inputPath = $"{BaseDirectory}/{file.DirectoryName}/{file.Filename}";
 
@@ -64,7 +64,7 @@ namespace LeafWeb.Core.Remote
 			}
 		}
 
-		public PiscalStatus GetLeafInputStatus(PiscalLeafInputFile file)
+		public PiscalStatus GetLeafInputFileStatus(PiscalLeafInputFile file)
 		{
 			var statusRaw = GetLeafInputStatusRaw(file);
 
@@ -99,6 +99,9 @@ namespace LeafWeb.Core.Remote
 			}
 		}
 
+		/// <summary>
+		/// Gets the leaf output from piscal, only run on if result status is success
+		/// </summary>
 		public IEnumerable<PiscalLeafOutputFile> RetrieveLeafOutput(PiscalLeafInputFile file)
 		{
 			// get output files