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More improvements to registration, leaf input create, and charting

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This commit is contained in:
James Kolpack
2020-01-14 14:10:11 -05:00
parent 8452a9cce0
commit 046cda40b4
18 changed files with 180 additions and 77 deletions
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Core.Tests/Parsers/LeafInputData/b2.csv
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Investigator name: -9999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Contact information: -9999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Site name in full: -9999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Vegetation type: -9999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Soil type: -9999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Major species: -9999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Sample leaf light environment:-9999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Water stress assessment: -9999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Instrument used: Licor-6400,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
Extra info: -9999,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,
SiteID,Latitude(Degrees),Longitude(Degrees),Elevation,SampleYear,SampleDayOfYear,GrowSeasonStart,GrowSeasonEnd,StandAge,CanopyHeight,LeafAreaIndex,SpeciesSampled,AveTimeResolution,SampleHeight,LeafAge,SpecificLeafArea,LfNitrogenContent,LfCarbonContent,LfPhosphContent,,,,,,,,,,,,
NoUnit,NorthPositive,EastPositive,m,NoUnit,DayOfYear,DayOfYear,DayOfYear,Year,m,m2/m2,NoBlankSpace,Minutes,m,days,cm2/g,%,%,%,,,,,,,,,,,,
MOFLUX,-9999,-9999,-9999,-9999,-9999,-9999,-9999,-9999,-9999,-9999,P.glauca-2,-9999,-9999,-9999,-9999,-9999,-9999,-9999,,,,,,,,,,,,
Gamma*,Kc,Ko,Alpha,Rd,gi,,,,,,,,,,,,,,,,,,,,,,,,,
Pa,Pa,Pa,NoUnit,umol/m2/s,umol/m2/s/Pa,,,,,,,,,,,,,,,,,,,,,,,,,
-9999,-9999,-9999,-9999,-9999,-9999,,,,,,,,,,,,,,,,,,,,,,,,,
Obs,HHMMSS,FTime,Photo,!AdjPhoto,!StomCond,!Ci,!Trmmol,!VpdL,Area,StmRat,BLCond,Tair,!Tleaf,TBlk,CO2R,CO2S,H2OR,H2OS,RH_R,RH_S,Flow,!PARi,PARo,Press,CsMch,HsMch,StableF,Status,PhiPS2,OxygenPress
NoUnit,HHMMSS,Second,umol/m2/s,umol/m2/s,mol/m2/s,umol/mol,mmol/m2/s,kPa,cm2,NA,mol/m2/s,oC,oC,oC,umol/mol,umol/mol,mmol/mol,mmol/mol,%,%,umol/s,umol/m2/s,umol/m2/s,Kpa,umol/mol,mmol/mol,NA,NA,NA,KPA
1,14:04:01,216.9999995,17.66091043,4.492612863,0.098849451,280.3709372,1.338910842,1.139404191,39.311,1,8,32.96362305,31.3519249,32.06974411,399.9895935,360.8808594,32.6089325,42.68330765,56.52416992,73.98905945,500.1534424,1599.706421,1804.285645,87.39344788,8.136817932,0.023298264,0.666666687,111115,-9999,-9999
2,14:06:29,364.9999998,11.42024488,2.905101595,0.068416192,198.4392999,1.330580521,1.62531275,39.311,1,8,32.97150803,33.09469604,32.0753479,299.9839478,274.2851257,32.50420761,42.51641846,56.31570816,73.66376495,500.2148743,1599.678955,1799.178467,87.3903656,8.136817932,0.023298264,1,111115,-9999,-9999
3,14:09:14,529.9999995,4.434742866,1.128117541,0.071337939,158.6916287,1.307510509,1.533645385,39.311,1,8,32.97004318,32.658741,32.07339859,200.1413116,189.3286438,32.34984589,42.19319153,56.05310059,73.1060257,500.1433105,1599.645996,1799.468262,87.39042664,8.136817932,0.023298264,0.666666687,111115,-9999,-9999
4,14:12:22,717.9999999,0.483357938,0.122957426,0.094024954,94.0967433,1.353692054,1.210345081,39.311,1,8,32.94629669,31.44996452,32.06907272,100.4642715,98.45015717,31.96475983,42.15702438,55.45473099,73.1427002,500.1008606,1599.779297,1795.099731,87.38063049,6.053817749,0.123514175,1,111115,-9999,-9999
5,14:15:12,887.9999999,-1.857541948,-0.472524725,0.082404107,70.17079835,1.329135733,1.352970625,39.311,1,8,32.98172379,31.94628525,32.07586288,59.58465195,62.64400101,32.03879166,42.04571915,55.69216919,72.7999115,500.1813049,1599.699463,1760.709595,87.37692261,5.704711914,0.062330246,1,111115,-9999,-9999
6,14:19:34,1150,16.30916547,4.14875365,0.079962358,271.383255,1.338371639,1.403340902,39.311,1,8,33.02922058,32.06547928,32.07368469,400.1173706,363.6842041,31.76015663,41.83911514,54.8360939,72.24120331,500.1653442,1599.657104,1755.306274,87.37147522,8.517822266,0.066820145,1,111115,-9999,-9999
7,14:22:50,1345.499999,16.06966804,4.08782988,0.08531807,278.9191735,1.306694333,1.286360373,39.311,1,8,32.99898911,31.48867989,32.07667542,400.1026001,364.2318726,31.60316467,41.44794846,54.65733719,71.68660736,500.1469421,1599.771118,1741.524658,87.36854553,8.694000244,0.037614822,0.666666687,111115,-9999,-9999
8,14:26:41,1576.999999,24.90194221,6.334599019,0.072383026,391.2392941,1.27531951,1.476526969,39.311,1,8,33.01140594,32.02433777,32.06568146,600.9141846,545.6561279,31.30322266,40.9168129,54.09747696,70.71539307,500.1540222,1599.645874,1693.521729,87.3644104,9.683013916,0.058748245,0.333333343,111115,-9999,-9999
9,14:30:55,1830.999999,31.45972651,8.002779504,0.067210056,520.0650538,1.234006387,1.538109638,39.311,1,8,33.00231934,32.02142334,32.07824326,800.427002,730.4495239,30.92346191,40.2313118,53.46592331,69.56246185,500.20578,1599.726563,1707.336426,87.35868835,11.23129272,-0.098421097,0.666666687,111115,-9999,-9999
10,14:34:26,2039.499999,36.75349062,9.349416351,0.064911969,662.3618311,1.195136545,1.542834603,39.311,1,8,32.99179459,31.8321476,32.07229233,999.9680786,917.8516846,30.60204124,39.62445831,52.94240189,68.55239105,500.0918884,1599.651855,985.2610474,87.35500336,11.23129272,-0.098421097,1,111115,-9999,-9999
11,14:38:03,2258.999999,41.55310038,10.57034936,0.058111493,783.109101,1.186337212,1.708234786,39.311,1,8,32.98957062,32.30555344,32.07281494,1200.413086,1107.016968,30.23540306,39.19365311,52.30853271,67.81102753,500.1899109,1599.74231,1676.356567,87.35036469,12.14645386,0.012842178,0.333333343,111115,-9999,-9999
12,14:42:21,2516.999999,44.97176888,11.43999615,0.059221762,952.2061451,1.160387436,1.64134362,39.311,1,8,33.0266304,31.86928368,32.0715065,1400.504028,1298.748413,29.87436676,38.64186859,51.57442474,66.71395111,500.1801453,1599.677002,1667.658203,87.34835815,13.11935425,0.060182571,0.666666687,111115,-9999,-9999
13,14:46:53,2788.499999,49.88318877,12.68937162,0.055250937,1268.009959,1.13122438,1.714106087,39.311,1,8,33.04856491,31.98287392,32.07389069,1801.062866,1686.328369,29.63163757,38.18371582,51.08673859,65.8352356,500.1304626,1599.650146,1641.924194,87.33757019,14.18380737,0.081045151,0.666666687,111115,-9999,-9999
14,14:50:47,3022.999999,54.15459401,13.77593905,0.049960229,1374.984929,1.103395472,1.847114612,39.311,1,8,33.05990219,32.31631851,32.07295609,2000.835083,1876.276733,29.3665905,37.71268463,50.59538269,64.97751617,500.1114197,1599.500244,1635.361938,87.33286285,20.7996521,0.11482811,0.666666687,111115,-9999,-9999
1 Investigator name: -9999
2 Contact information: -9999
3 Site name in full: -9999
4 Vegetation type: -9999
5 Soil type: -9999
6 Major species: -9999
7 Sample leaf light environment:-9999
8 Water stress assessment: -9999
9 Instrument used: Licor-6400
10 Extra info: -9999
11 SiteID Latitude(Degrees) Longitude(Degrees) Elevation SampleYear SampleDayOfYear GrowSeasonStart GrowSeasonEnd StandAge CanopyHeight LeafAreaIndex SpeciesSampled AveTimeResolution SampleHeight LeafAge SpecificLeafArea LfNitrogenContent LfCarbonContent LfPhosphContent
12 NoUnit NorthPositive EastPositive m NoUnit DayOfYear DayOfYear DayOfYear Year m m2/m2 NoBlankSpace Minutes m days cm2/g % % %
13 MOFLUX -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 -9999 P.glauca-2 -9999 -9999 -9999 -9999 -9999 -9999 -9999
14 Gamma* Kc Ko Alpha Rd gi
15 Pa Pa Pa NoUnit umol/m2/s umol/m2/s/Pa
16 -9999 -9999 -9999 -9999 -9999 -9999
17 Obs HHMMSS FTime Photo !AdjPhoto !StomCond !Ci !Trmmol !VpdL Area StmRat BLCond Tair !Tleaf TBlk CO2R CO2S H2OR H2OS RH_R RH_S Flow !PARi PARo Press CsMch HsMch StableF Status PhiPS2 OxygenPress
18 NoUnit HHMMSS Second umol/m2/s umol/m2/s mol/m2/s umol/mol mmol/m2/s kPa cm2 NA mol/m2/s oC oC oC umol/mol umol/mol mmol/mol mmol/mol % % umol/s umol/m2/s umol/m2/s Kpa umol/mol mmol/mol NA NA NA KPA
19 1 14:04:01 216.9999995 17.66091043 4.492612863 0.098849451 280.3709372 1.338910842 1.139404191 39.311 1 8 32.96362305 31.3519249 32.06974411 399.9895935 360.8808594 32.6089325 42.68330765 56.52416992 73.98905945 500.1534424 1599.706421 1804.285645 87.39344788 8.136817932 0.023298264 0.666666687 111115 -9999 -9999
20 2 14:06:29 364.9999998 11.42024488 2.905101595 0.068416192 198.4392999 1.330580521 1.62531275 39.311 1 8 32.97150803 33.09469604 32.0753479 299.9839478 274.2851257 32.50420761 42.51641846 56.31570816 73.66376495 500.2148743 1599.678955 1799.178467 87.3903656 8.136817932 0.023298264 1 111115 -9999 -9999
21 3 14:09:14 529.9999995 4.434742866 1.128117541 0.071337939 158.6916287 1.307510509 1.533645385 39.311 1 8 32.97004318 32.658741 32.07339859 200.1413116 189.3286438 32.34984589 42.19319153 56.05310059 73.1060257 500.1433105 1599.645996 1799.468262 87.39042664 8.136817932 0.023298264 0.666666687 111115 -9999 -9999
22 4 14:12:22 717.9999999 0.483357938 0.122957426 0.094024954 94.0967433 1.353692054 1.210345081 39.311 1 8 32.94629669 31.44996452 32.06907272 100.4642715 98.45015717 31.96475983 42.15702438 55.45473099 73.1427002 500.1008606 1599.779297 1795.099731 87.38063049 6.053817749 0.123514175 1 111115 -9999 -9999
23 5 14:15:12 887.9999999 -1.857541948 -0.472524725 0.082404107 70.17079835 1.329135733 1.352970625 39.311 1 8 32.98172379 31.94628525 32.07586288 59.58465195 62.64400101 32.03879166 42.04571915 55.69216919 72.7999115 500.1813049 1599.699463 1760.709595 87.37692261 5.704711914 0.062330246 1 111115 -9999 -9999
24 6 14:19:34 1150 16.30916547 4.14875365 0.079962358 271.383255 1.338371639 1.403340902 39.311 1 8 33.02922058 32.06547928 32.07368469 400.1173706 363.6842041 31.76015663 41.83911514 54.8360939 72.24120331 500.1653442 1599.657104 1755.306274 87.37147522 8.517822266 0.066820145 1 111115 -9999 -9999
25 7 14:22:50 1345.499999 16.06966804 4.08782988 0.08531807 278.9191735 1.306694333 1.286360373 39.311 1 8 32.99898911 31.48867989 32.07667542 400.1026001 364.2318726 31.60316467 41.44794846 54.65733719 71.68660736 500.1469421 1599.771118 1741.524658 87.36854553 8.694000244 0.037614822 0.666666687 111115 -9999 -9999
26 8 14:26:41 1576.999999 24.90194221 6.334599019 0.072383026 391.2392941 1.27531951 1.476526969 39.311 1 8 33.01140594 32.02433777 32.06568146 600.9141846 545.6561279 31.30322266 40.9168129 54.09747696 70.71539307 500.1540222 1599.645874 1693.521729 87.3644104 9.683013916 0.058748245 0.333333343 111115 -9999 -9999
27 9 14:30:55 1830.999999 31.45972651 8.002779504 0.067210056 520.0650538 1.234006387 1.538109638 39.311 1 8 33.00231934 32.02142334 32.07824326 800.427002 730.4495239 30.92346191 40.2313118 53.46592331 69.56246185 500.20578 1599.726563 1707.336426 87.35868835 11.23129272 -0.098421097 0.666666687 111115 -9999 -9999
28 10 14:34:26 2039.499999 36.75349062 9.349416351 0.064911969 662.3618311 1.195136545 1.542834603 39.311 1 8 32.99179459 31.8321476 32.07229233 999.9680786 917.8516846 30.60204124 39.62445831 52.94240189 68.55239105 500.0918884 1599.651855 985.2610474 87.35500336 11.23129272 -0.098421097 1 111115 -9999 -9999
29 11 14:38:03 2258.999999 41.55310038 10.57034936 0.058111493 783.109101 1.186337212 1.708234786 39.311 1 8 32.98957062 32.30555344 32.07281494 1200.413086 1107.016968 30.23540306 39.19365311 52.30853271 67.81102753 500.1899109 1599.74231 1676.356567 87.35036469 12.14645386 0.012842178 0.333333343 111115 -9999 -9999
30 12 14:42:21 2516.999999 44.97176888 11.43999615 0.059221762 952.2061451 1.160387436 1.64134362 39.311 1 8 33.0266304 31.86928368 32.0715065 1400.504028 1298.748413 29.87436676 38.64186859 51.57442474 66.71395111 500.1801453 1599.677002 1667.658203 87.34835815 13.11935425 0.060182571 0.666666687 111115 -9999 -9999
31 13 14:46:53 2788.499999 49.88318877 12.68937162 0.055250937 1268.009959 1.13122438 1.714106087 39.311 1 8 33.04856491 31.98287392 32.07389069 1801.062866 1686.328369 29.63163757 38.18371582 51.08673859 65.8352356 500.1304626 1599.650146 1641.924194 87.33757019 14.18380737 0.081045151 0.666666687 111115 -9999 -9999
32 14 14:50:47 3022.999999 54.15459401 13.77593905 0.049960229 1374.984929 1.103395472 1.847114612 39.311 1 8 33.05990219 32.31631851 32.07295609 2000.835083 1876.276733 29.3665905 37.71268463 50.59538269 64.97751617 500.1114197 1599.500244 1635.361938 87.33286285 20.7996521 0.11482811 0.666666687 111115 -9999 -9999