journals/firstmonday/Wiggins01:::Richard Wiggins:::The Unnoticed Presidential Transition: Whither Whitehouse.gov?
journals/firstmonday/Kennelly00:::Brian G. Kennelly:::Caught in/on the Web: To Publish Without Perishing in the Digital Age.
journals/firstmonday/Evans00:::Fred Evans:::Cyberspace and the Concept of Democracy.
journals/firstmonday/NardiO99:::Bonnie A. Nardi::Vicki L. O'Day:::Full Table of Contents.
journals/firstmonday/BagherianT00:::Fatemeh Bagherian::Warren Thorngate:::Horses to Water: Student Use of Course Newsgroups.
journals/firstmonday/Tidwell99:::Alan Tidwell:::The Virtual Agora: Online Ethical Dialogues and Professional Communities.
journals/firstmonday/Dafermos01:::George N. Dafermos:::Management and Virtual Decentralised Networks: The Linux Project.
journals/firstmonday/Raymond99:::Eric S. Raymond:::A Response to Nikolai Bezroukov.
journals/firstmonday/Lynch02:::Clifford A. Lynch:::Digital Collections, Digital Libraries and the Digitization of Cultural Heritage Information.
journals/firstmonday/Williams98a:::Eric Williams:::Predicting E-mail Effects in Organisations.
journals/firstmonday/Fraim02:::John Fraim:::Electric Symbols: Internet Words And Culture.
journals/firstmonday/Maxwell03:::Terrence A. Maxwell:::Toward a model of information policy analysis: Speech as an illustrative example.
journals/firstmonday/DeLong97:::Stephen E. DeLong:::The Shroud of Lecturing.
journals/firstmonday/KhopkarSGSp03:::Yashmeet Khopkar::Amanda Spink::C. Lee Giles::Prital Shah::Sandip Debnath:::Search engine personalization: An exploratory study.
journals/firstmonday/HaraE03:::Noriko Hara::Zilia Estrada:::Hate and peace in a connected world: Comparing MoveOn and Stormfront.
journals/firstmonday/Tuomi02:::Ilkka Tuomi:::The Lives and Death of Moore's Law.
journals/firstmonday/Jesiek03:::Brent K. Jesiek:::Democratizing software: Open source, the hacker ethic, and beyond.
journals/bioinformatics/GrobS87:::U. Grob::K. Stuber:::GENEXPERT, a program system for nucleic acid sequence structural interpretation.
journals/bioinformatics/LaferriereGC94:::A. Laferriere::D. Gautheret::Robert Cedergren:::An RNA pattern matching program with enhanced performance and portability.
journals/bioinformatics/KeithABKMCL02:::Jonathan M. Keith::Peter Adams::Darryn Bryant::Dirk P. Kroese::Keith R. Mitchelson::Duncan A. E. Cochran::Gita H. Lala:::A simulated annealing algorithm for finding consensus sequences.
journals/bioinformatics/MillerOR90:::W. Miller::James Ostell::Kenneth E. Rudd:::An algorithm for searching restriction maps.
journals/bioinformatics/Kyrpides99:::N. C. Kyrpides:::Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide.
journals/bioinformatics/Bond03:::Charles S. Bond:::TopDraw: a sketchpad for protein structure topology cartoons.
journals/bioinformatics/Trelles-SalazarZC94:::Oswaldo Trelles-Salazar::Emilio L. Zapata::José María Carazo:::On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures.
journals/bioinformatics/ThorleyP00:::Joseph L. Thorley::Roderic D. M. Page:::RadCon: phylogenetic tree comparison and consensus.
journals/bioinformatics/GuanD98:::X. Guan::L. Du:::Domain identification by clustering sequence alignments.
journals/bioinformatics/Beynon85c:::R. J. Beynon:::A general purpose non-linear curve fitting program for the British Broadcasting Corporation Microcomputer.
journals/bioinformatics/TammiABA02:::Martti T. Tammi::Erik Arner::Tom Britton::Björn Andersson:::Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs.
journals/bioinformatics/BiaudetSB97:::V. Biaudet::Franck Samson::Philippe Bessières:::Micado - a network-oriented database for microbial genomes.
journals/bioinformatics/MakarovaMWS92:::K. S. Makarova::A. V. Mazin::Yuri I. Wolf::V. V. Soloviev:::DIROM: an experimental design interactive system for directed mutagenesis and nucleic acids engineering.
journals/bioinformatics/OkayamaTGTIMFS98:::Toshitsugu Okayama::T. Tamura::Takashi Gojobori::Yoshio Tateno::K. Ikeo::Satoru Miyazaki::Kaoru Fukami-Kobayashi::Hideaki Sugawara:::Formal design and implementation of an improved DDBJ DNA database with a new schema and object-oriented library.
journals/bioinformatics/MetzkerAG95:::M. L. Metzker::K. M. Allain::Richard A. Gibbs:::Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0).
journals/bioinformatics/ChenAD93:::Edward S. Chen::C. Asano::Daniel B. Davison:::Parallel alignment of DNA sequences on the Connection Machine CM-2.
journals/bioinformatics/ZhangCG03:::Jianhua Zhang::Vincent Carey::Robert Gentleman:::An extensible application for assembling annotation for genomic data.
journals/bioinformatics/Bains97:::W. Bains:::Hexanucleotide frequency database.
journals/bioinformatics/YangCGB03:::Peng Yang::Paul A. Craig::David Goodsell::Philip E. Bourne:::BioEditor - Simplifying Macromolecular Structure Annotation.
journals/bioinformatics/ZmasekE01a:::Christian M. Zmasek::Sean R. Eddy:::ATV: display and manipulation of annotated phylogenetic.
journals/bioinformatics/AloyR03:::Patrick Aloy::Robert B. Russell:::InterPreTS: protein Interaction Prediction through Tertiary Structure.
journals/bioinformatics/NicholasCM87:::H. B. Nicholas::Y. M. Chen::W. H. McClain:::Comparison of tRNA sequences.
journals/bioinformatics/ErnstGS03:::Peter Ernst::Karl-Heinz Glatting::Sándor Suhai:::A task framework for the web interface W2H.
journals/bioinformatics/MarguliesI00:::Elliott H. Margulies::Jeffrey W. Innis:::eSAGE: managing and analysing data generated with Serial Analysis of Gene Expression (SAGE).
journals/bioinformatics/Sparling90:::M. L. Sparling:::Analysis of mixed lipid extracts using 1H NMR spectra.
journals/bioinformatics/AszodiT93:::A. Aszodi::William R. Taylor:::Connection topology of proteins.
journals/bioinformatics/Lopez-BuenoM92:::J. A. Lopez-Bueno::A. Moya:::GEOSEQ: a Pascal program to calculate statistical geometry parameters of aligned nucleic acid sequences.
journals/bioinformatics/RadinK86:::N. S. Radin::P. Klinger:::A computer program for selecting animals for control and experimental groups in biochemical studies.
journals/bioinformatics/SchneiderSW94:::Gisbert Schneider::Johannes Schuchhardt::Paul Wrede:::Artificial neural networks and simulated molecular evolution are potential tools for sequence-oriented protein design.
journals/bioinformatics/Fielding88:::A. Fielding:::Matrix algebra routines for the Acorn Archimedes microcomputer: example applications.
journals/bioinformatics/Fielding92:::A. Fielding:::Applications of fractal geometry to biology.
journals/bioinformatics/RoccoC03:::Daniel Rocco::Terence Critchlow:::Automatic discovery and classification of bioinformatics Web sources.
journals/bioinformatics/KolesovMF02:::Grigory Kolesov::Hans-Werner Mewes::Dmitrij Frishman:::SNAPper: gene order predicts gene function.
journals/bioinformatics/SalamovNS98:::Asaf A. Salamov::Tetsuo Nishikawa::M. B. Swindells:::Assessing protein coding region integrity in cDNA sequencing projects.
journals/bioinformatics/SubochS90:::G. M. Suboch::Yu. A. Sprizhitsky:::Statistical significance of some complex nucleotide combinations: a comparison of DNA models.
journals/bioinformatics/CockwellG89:::K. Y. Cockwell::I. G. Giles:::Software tools for motif and pattern scanning: program descriptions including a universal sequence reading algorithm.
journals/bioinformatics/AlvesS00b:::Rui Alves::Michael A. Savageau:::Systemic properties of ensembles of metabolic networks: application of graphical and statistical methods to simple unbranched pathways.
journals/bioinformatics/KoseWLF01:::Frank Kose::Wolfram Weckwerth::Thomas Linke::Oliver Fiehn:::Visualizing plant metabolomic correlation networks using clique-metabolite matrices.
journals/bioinformatics/Presting03:::Gernot G. Presting:::Mapping multiple co-sequenced T-DNA integration sites within the Arabidopsis genome.
journals/bioinformatics/WangHWPG03:::Xujing Wang::Martin J. Hessner::Yan Wu::Nirupma Pati::Soumitra Ghosh:::Quantitative Quality Control in Microarray Experiments and the Application in Data Filtering, Normalization and False Positive Rate Prediction.
journals/bioinformatics/StephenSB90:::R. O. Stephen::P. M. Shelton::M. S. Bradshaw:::Generating precise mechanical stimuli and recording chordotonal organ discharge patterns using a microcomputer.
journals/bioinformatics/KeC03:::Xiayi Ke::Lon R. Cardon:::Efficient selective screening of haplotype tag SNPs.
journals/bioinformatics/PazPT92:::P. Paz::J. Renau Piqueras::E. J. Tizado:::A program for the application of the radial distribution function to cluster analysis in cell biology.
journals/bioinformatics/HolmP00:::Liisa Holm::Jong Park:::DaliLite workbench for protein structure comparison.
journals/bioinformatics/MaZ03:::Hongwu Ma::An-Ping Zeng:::Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms.
journals/bioinformatics/WangL03:::Jianxin Wang::Ping Liang:::DigiNorthern, digital expression analysis of query genes based on ESTs.
journals/bioinformatics/WangS03:::Xiaowei Wang::Brian Seed:::Selection of Oligonucleotide Probes for Protein Coding Sequences.
journals/bioinformatics/VuV02:::Tra Thi Vu::Jiri Vohradsky:::Genexp-a genetic network simulation environment.
journals/bioinformatics/TanoueYU02:::Junko Tanoue::Masatoshi Yoshikawa::Shunsuke Uemura:::The GeneAround GO viewer.
journals/bioinformatics/Karp00:::Peter D. Karp:::An ontology for biological function based on molecular interactions.
journals/bioinformatics/Karp92:::Peter D. Karp:::A knowledge base of the chemical compounds of intermediary metabolism.
journals/bioinformatics/Prestridge96:::D. S. Prestridge:::SIGNAL SCAN 4.0: additional databases and sequence formats.
journals/bioinformatics/JrBP85:::P. W. Roome Jr::C. Brewer::J. A. Peterson:::An approach to the collection and manipulation of time-based data using the IBM PC and BASICA.
journals/bioinformatics/BakerGBPSB99:::Patricia G. Baker::Carole A. Goble::Sean Bechhofer::Norman W. Paton::Robert Stevens::Andy Brass:::An ontology for bioinformatics applications.
journals/bioinformatics/Cammer00:::Stephen A. Cammer:::SChiSM: creating interactive web page annotations of molecular structure models using Chime.
journals/bioinformatics/ParkYLLYAL03:::Taesung Park::Sung-Gon Yi::Seungmook Lee::Seung Yeoun Lee::Dong-Hyun Yoo::Jun-Ik Ahn::Yong-Sung Lee:::Statistical tests for identifying differentially expressed genes in time-course microarray experiments.
journals/bioinformatics/EngleB94:::Michael L. Engle::Christian Burks:::GenFrag 2.1: new features for more robust fragment assembly benchmarks.
journals/bioinformatics/Shifman93:::M. A. Shifman:::PFGE MAPPER: a tool to aid in the analysis of pulse field gel electrophoresis maps.
journals/bioinformatics/King89:::G. J. King:::ELBAMAP: software for management of electrophoresis banding patterns.
journals/bioinformatics/LawB96:::A. S. Law::D. W. Burt:::qValue - a program to calculate comparative measures of genomic reorganisation from cytogenetic and/or linkage information.
journals/bioinformatics/GavinSROBSSRC02:::A. J. Gavin::Todd E. Scheetz::Chad A. Roberts::B. O'Leary::Terry A. Braun::Val C. Sheffield::Marcelo B. Soares::J. P. Robinson::Thomas L. Casavant:::Pooled library tissue tags for EST-based gene discovery.
journals/bioinformatics/GascuelG88:::Olivier Gascuel::J. L. Golmard:::A simple method for predicting the secondary structure of globular proteins: implications and accuracy.
journals/bioinformatics/Wozniak97:::A. Wozniak:::Using video-oriented instructions to speed up sequence comparison.
journals/bioinformatics/FitchG91:::D. H. Fitch::M. Goodman:::Phylogenetic scanning: a computer-assisted algorithm for mapping gene conversions and other recombinational events.
journals/bioinformatics/NgHH00:::Pauline C. Ng::Jorja G. Henikoff::Steven Henikoff:::PHAT: a transmembrane-specific substitution matrix.
journals/bioinformatics/Huang94:::X. Huang:::An algorithm for identifying regions of a DNA sequence that satisfy a content requirement.
journals/bioinformatics/AkmaevKS00:::Viatcheslav R. Akmaev::Scott T. Kelley::Gary D. Stormo:::Phylogenetically enhanced statistical tools for RNA structure prediction.
journals/bioinformatics/Vingron01:::Martin Vingron:::Bioinformatics needs to adopt statistical thinking - Editorial.
journals/bioinformatics/KozikKM02:::A. Kozik::E. Kochetkova::R. Michelmore:::GenomePixelizer-a visualization program for comparative genomics within and between species.
journals/bioinformatics/SchlosshauerO02:::Maximilian Schlosshauer::Mattias Ohlsson:::A novel approach to local reliability of sequence alignments.
journals/bioinformatics/ClotetCQ94:::J. Clotet::J. Cedano::Enrique Querol:::An Excel spreadsheet computer program combining algorithms for prediction of protein structural characteristics.
journals/bioinformatics/GaizauskasDAW03:::Robert J. Gaizauskas::George Demetriou::Peter J. Artymiuk::Peter Willett:::Protein Structures and Information Extraction from Biological Texts: The PASTA System.
journals/bioinformatics/CheungNS98:::Kei-Hoi Cheung::Prakash M. Nadkarni::Dong-Guk Shin:::A metadata approach to query interoperation between molecular biology databases.
journals/bioinformatics/ChuGSS03:::Tianjiao Chu::Clark Glymour::Richard Scheines::Peter Spirtes:::A Statistical Problem for Inference to Regulatory Structure from Associations of Gene Expression Measurements with Microarrays.
journals/bioinformatics/IshikawaTHNOK93:::Masato Ishikawa::Tomoyuki Toya::Masaki Hoshida::Katsumi Nitta::A. Ogiwara::M. Kanehisa:::Multiple sequence alignment by parallel simulated annealing.
journals/bioinformatics/FellenbergHBHV02:::Kurt Fellenberg::Nicole C. Hauser::Benedikt Brors::Jörg D. Hoheisel::Martin Vingron:::Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis.
journals/bioinformatics/BhasinSR03:::Manoj Bhasin::Harpreet Singh::G. P. S. Raghava:::MHCBN: a comprehensive database of MHC binding and non-binding peptides.
journals/bioinformatics/GrigorievLL98:::Andrei Grigoriev::A. Levin::Hans Lehrach:::A distributed environment for physical map construction.
journals/bioinformatics/KampkeKM01:::Thomas Kämpke::Markus Kieninger::Michael Mecklenburg:::Efficient primer design algorithms.
journals/bioinformatics/GriceHS97:::J. Alicia Grice::Richard Hughey::Don Speck:::Reduced space sequence alignment.
journals/bioinformatics/SirajuddinNO95:::K. Sirajuddin::T. Nagashima::K. Ono:::A new algorithm for predicting splice site sequence based on an improvement of categorical discriminant analysis.
journals/bioinformatics/FrankL00:::A. C. Frank::J. R. Lobry:::Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes.
journals/bioinformatics/Hodgman86:::T. C. Hodgman:::The elucidation of protein function from its amino acid sequence.
journals/bioinformatics/GeierKFMM01:::Birgitta Geier::Gabi Kastenmüller::Matthias Fellenberg::Hans-Werner Mewes::Burkhard Morgenstern:::The HIB database of annotated UniGene clusters.
journals/bioinformatics/TatusovaKO99:::Tatiana A. Tatusova::Ilene Karsch-Mizrachi::James Ostell:::Complete genomes in WWW Entrez: data representation and analysis.
journals/bioinformatics/ModelevskyA88:::J. L. Modelevsky::T. G. Akers:::Reiterative RNA folding and occupancy rate analysis for mRNA modelling.
journals/bioinformatics/McConnellJL02:::Patrick McConnell::Kimberly F. Johnson::Simon M. Lin:::Applications of Tree-Maps to hierarchical biological data.
journals/bioinformatics/Davidow92:::L. S. Davidow:::Selecting PCR designed mismatch primers to create diagnostic restriction sites.
journals/bioinformatics/CreightonH03:::Chad Creighton::Samir Hanash:::Mining gene expression databases for association rules.
journals/bioinformatics/NovereS01:::Nicolas Le Novère::Thomas Simon Shimizu:::STOCHSIM: modelling of stochastic biomolecular processes.
journals/bioinformatics/KolchanovPFAKIPGSMBPKPVLGKMWSO99:::Nikolay A. Kolchanov::M. P. Ponomarenko::Anatoly S. Frolov::Elena A. Ananko::F. A. Kolpakov::Elena V. Ignatieva::Olga A. Podkolodnaya::T. N. Goryachkovskaya::Irina L. Stepanenko::Tatyana I. Merkulova::V. V. Babenko::Y. V. Ponomarenko::Alexey V. Kochetov::Nikolay L. Podkolodny::D. V. Vorobiev::Sergey V. Lavryushev::Dmitry A. Grigorovich::Y. V. Kondrakhin::Luciano Milanesi::Edgar Wingender::Victor V. Solovyev::G. Christian Overton:::Integrated databases and computer systems for studying eukaryotic gene expression.
journals/bioinformatics/MurvaiVBPHPP99:::Jámps Murvai::Kristian Vlahovicek::E. Barta::S. Parthasarathy::Hedvig Hegyi::Friedhelm Pfeiffer::Sándor Pongor:::The domain-server: direct prediction of protein domain-homologies from BLAST search.
journals/bioinformatics/FischerW90:::T. H. Fischer::G. C. White II:::The development of a high-order Taylor expansion solution to the chemical rate equation for the simulation of complex biochemical systems.
journals/bioinformatics/Brown91:::J. W. Brown:::Phylogenetic comparative analysis of RNA structure on Macintosh computers.
journals/bioinformatics/TaylorRS91:::P. Taylor::P. Rosenberg::Maria Samsonova:::A new method for finding long consensus patterns in nucleic acid sequences.
journals/bioinformatics/KleffeB92:::Jürgen Kleffe::Mark Borodovsky:::First and second moment of counts of words in random texts generated by Markov chains.
journals/bioinformatics/NovichkovaED03:::Svetlana Novichkova::Sergei Egorov::Nikolai Daraselia:::MedScan, a natural language processing engine for MEDLINE abstracts.
journals/bioinformatics/JohnsonMMXSH03:::Jason M. Johnson::Keith Mason::Ciamac Moallemi::Hualin Xi::Shyamal Somaroo::Enoch S. Huang:::Protein family annotation in a multiple alignment viewer.
journals/bioinformatics/AhmadGS03:::Shandar Ahmad::M. Michael Gromiha::Akinori Sarai:::RVP-net: online prediction of real valued accessible surface area of proteins from single sequences.
journals/bioinformatics/GrilloALP96:::Giorgio Grillo::Marcella Attimonelli::Sabino Liuni::Graziano Pesole:::CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases.
journals/bioinformatics/JungPZPB95:::S. Jung::S. Perkins::Y. Zhong::Sakti Pramanik::J. H. Beaman:::A new data model for biological classification.
journals/bioinformatics/WoolleyJSCM03:::Steve Woolley::Justin Johnson::Matthew J. Smith::Keith A. Crandall::David A. McClellan:::TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees.
journals/bioinformatics/Ladunga99:::Istvan Ladunga:::PHYSEAN: PHYsical SEquence ANalysis for the identification of protein domains on the basis of physical and chemical properties of amino acids.
journals/bioinformatics/LeplaeH02:::Raphael Leplae::Tim J. P. Hubbard:::MaxBench: evaluation of sequence and structure comparison methods.
journals/bioinformatics/Byers92:::J. A. Byers:::REF-LIST: program to list references found in DOS text files of scientific manuscripts.
journals/bioinformatics/XingB01:::Liqun Xing::Volker Brendel:::Multi-query sequence BLAST output examination with MuSeqBox.
journals/bioinformatics/PesoleLD00:::Graziano Pesole::Sabino Liuni::Mark D'Souza:::PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.
journals/bioinformatics/SouthernL98:::M. R. Southern::A. P. Lewis:::JavaShade: multiple sequence alignment box-and-shading on the World Wide Web.
journals/bioinformatics/Cocea97:::L. Cocea:::Search the Human cDNA Database at TIGR.
journals/bioinformatics/Jamison03:::D. Curtis Jamison:::Open Bioinformatics.
journals/bioinformatics/Shrager03:::Jeff Shrager:::The fiction of function.
journals/bioinformatics/SuyamaONO93:::M. Suyama::A. Ogiwara::T. Nishioka::J. Oda:::Searching for amino acid sequence motifs among enzymes: the Enzyme- Reaction Database.
journals/bioinformatics/Forsdyke02:::D. R. Forsdyke:::Symmetry observations in long nucleotide sequences: a commentary on the Discovery Note of Qi and Cuticchia.
journals/bioinformatics/FischerABMBRHPLREGSFT03:::T. B. Fischer::K. V. Arunachalam::D. Bailey::V. Mangual::S. Bakhru::R. Russo::D. Huang::M. Paczkowski::V. Lalchandani::C. Ramachandra::B. Ellison::S. Galer::J. Shapley::E. Fuentes::J. Tsai:::The Binding Interface Database (BID): A Compilation of Amino Acid Hot Spots in Protein Interfaces.
journals/bioinformatics/Aris-Brosou03:::Stéphane Aris-Brosou:::How Bayes tests of molecular phylogenies compare with frequentist approaches.
journals/bioinformatics/States01:::David J. States:::Time to defend what we have won
journals/bioinformatics/YeJLG03:::Yuzhen Ye::Lukasz Jaroszewski::Weizhong Li::Adam Godzik:::A segment alignment approach to protein comparison.
journals/bioinformatics/BlazewiczFGK02:::Jacek Blazewicz::Piotr Formanowicz::Frédéric Guinand::Marta Kasprzak:::A heuristic managing errors for DNA sequencing.
journals/bioinformatics/KrishnamoorthyT03:::Bala Krishnamoorthy::Alexander Tropsha:::Development of a four-body statistical pseudo-potential to discriminate native from non-native protein conformations.
journals/bioinformatics/ClaverieS85:::Jean-Michel Claverie::I. Sauvaget:::Assessing the biological significance of primary structure consensus patterns using sequence databanks. I. Heat-shock and glucocorticoid control elements in eukaryotic promoters.
journals/bioinformatics/CliffordM00:::Raphaël Clifford::Aaron J. Mackey:::Disperse: a simple and efficient approach to parallel database searching.
journals/bioinformatics/ClineHK02:::Melissa Cline::Richard Hughey::Kevin Karplus:::Predicting reliable regions in protein sequence alignments.
journals/bioinformatics/HeringaSHA92:::J. Heringa::H. Sommerfeldt::Desmond G. Higgins::P. Argos:::OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity.
journals/bioinformatics/DingD01:::Chris H. Q. Ding::Inna Dubchak:::Multi-class protein fold recognition using support vector machines and neural networks.
journals/bioinformatics/SeatonHKKV02:::George Seaton::Chris S. Haley::Sara A. Knott::Mike Kearsey::Peter M. Visscher:::QTL Express: mapping quantitative trait loci in simple and complex pedigrees.
journals/bioinformatics/PoundsM03:::Stan Pounds::Stephan W. Morris:::Estimating the Occurrence of False Positives and False Negatives in Microarray Studies by Approximating and Partitioning the Empirical Distribution of P-values.
journals/bioinformatics/TiwariRBBR97:::S. Tiwari::S. Ramachandran::A. Bhattacharya::S. Bhattacharya::R. Ramaswamy:::Prediction of probable genes by Fourier analysis of genomic sequences.
journals/bioinformatics/RamenskyMRT01:::Vasily Ramensky::Vsevolod Makeev::Mikhail A. Roytberg::Vladimir Tumanyan:::Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software.
journals/bioinformatics/BorodovskyKBFLSSZ01:::Mark Borodovsky::Eugene Koonin::Chris Burge::James W. Fickett::John Logsdon::Andrej Sali::Gary D. Stormo::Igor Zhulin:::The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA).
journals/bioinformatics/IazzettiSRBC98:::G. Iazzetti::G. Santini::M. Rau::E. Bucci::R. A. Calogero:::VIRTLAB: a virtual molecular biology laboratory.
journals/bioinformatics/HolmeHJ03:::Petter Holme::Mikael Huss::Hawoong Jeong:::Subnetwork hierarchies of biochemical pathways.
journals/bioinformatics/Jursa94:::J. Jursa:::DNA modeller: an interactive program for modelling stacks of DNA base pairs on a microcomputer.
journals/bioinformatics/HolmesB01:::Ian Holmes::William J. Bruno:::Evolutionary HMMs: a Bayesian approach to multiple alignment.
journals/bioinformatics/Lazovic96:::J. Lazovic:::Selection of amino acid parameters for Fourier transform-based analysis of proteins.
journals/bioinformatics/Galat89a:::A. Galat:::CORGEN: a FORTRAN-77 generator of standard and non-standard DNA helices from the sequence.
journals/bioinformatics/GrundyBE96:::William Noble Grundy::Timothy L. Bailey::Charles Elkan:::ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool.
journals/bioinformatics/BoutonP00:::Christopher M. L. S. Bouton::Jonathan Pevsner:::DRAGON: Database Referencing of Array Genes Online.
journals/bioinformatics/TsunodaT99:::T. Tsunoda::Toshihisa Takagi:::Estimating transcription factor bindability on DNA.
journals/bioinformatics/Maltchenko98:::S. Z. Maltchenko:::The bio-objects project. Part I: the object data model core elements.
journals/bioinformatics/CuffCSFB98:::James A. Cuff::Michele E. Clamp::Asim S. Siddiqui::M. Finlay::Geoffrey J. Barton:::JPred: a consensus secondary structure prediction server.
journals/bioinformatics/Leunissen03:::Jack A. M. Leunissen:::Chimera: construction of chimeric sequences for phylogenetic analysis.
journals/bioinformatics/GulerER03:::Sinan Güler::Andreas Eberhart::Isabel Rojas:::Web-based exchange of biochemical information.
journals/bioinformatics/CaoPYSYA03:::Jack Cao::Rosemarie Panetta::Shiyi Yue::Alain Steyaert::Michele Young-Bellido::Sultan Ahmad:::A naive Bayes model to predict coupling between seven transmembrane domain receptors, and G-proteins.
journals/bioinformatics/StoyeMD97:::Jens Stoye::Vincent L. Moulton::Andreas W. M. Dress:::DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment.
journals/bioinformatics/SteffenLYBW00:::David L. Steffen::Alan E. Levine::S. Yarus::R. A. Baasiri::D. A. Wheeler:::Digital reviews in molecular biology: approaches to structured digital publication.
journals/bioinformatics/Trifonov00:::Edward N. Trifonov:::Earliest pages of bioinformatics.
journals/bioinformatics/PandeyPTWCM03:::Akhilesh Pandey::Suraj Peri::Colin Thacker::Chery A. Whipple::John J. Collins::Matthias Mann:::Computational, experimental analysis reveals a novel Src family kinase in the C. elegans genome.
journals/bioinformatics/SalamaFH01:::John J. Salama::Howard J. Feldman::Christopher W. V. Hogue:::VISTRAJ: exploring protein conformational space.
journals/bioinformatics/Sauro93:::H. M. Sauro:::SCAMP: a general-purpose simulator and metabolic control analysis program.
journals/bioinformatics/JunierP00:::Thomas Junier::Marco Pagni:::Dotlet: diagonal plots in a Web browser.
journals/bioinformatics/Serra-HartmannRPQM00:::Xavier Serra-Hartmann::Xavier Rebordosa::Jaume Piñol::Enrique Querol::Marc A. Martí-Renom:::ASAP: analysis of peptide composition.
journals/bioinformatics/Maradona96:::M. P. Maradona:::Software for microbial fingerprinting by means of the infrared spectra.
journals/bioinformatics/UngerHS86:::Ron Unger::D. Harel::Joel L. Sussman:::DNAMAT: an efficient graphic matrix sequence homology algorithm and its application to structural analysis.
journals/bioinformatics/AutioHKYAWK03:::Reija Autio::Sampsa Hautaniemi::Päivikki Kauraniemi::Olli Yli-Harja::Jaakko Astola::Maija Wolf::Anne Kallioniemi:::CGH-Plotter: MATLAB toolbox for CGH-data analysis.
journals/bioinformatics/JohanssonLB03:::Daniel Johansson::Petter Lindgren::Anders Berglund:::A multivariate approach applied to microarray data for identification of genes with cell cycle-coupled transcription.
journals/bioinformatics/LiPPG00:::Weizhong Li::Frederic Pio::Krzysztof Pawlowski::Adam Godzik:::Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology.
journals/bioinformatics/ConklinJAT02:::Darrell Conklin::Inge Jonassen::Rein Aasland::William R. Taylor:::Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences.
journals/bioinformatics/GhoshC02:::Debashis Ghosh::Arul M. Chinnaiyan:::Mixture modelling of gene expression data from microarray experiments.
journals/bioinformatics/GelfandKP92:::Mikhail S. Gelfand::C. G. Kozhukhin::Pavel A. Pevzner:::Extendable words in nucleotide sequences.
journals/bioinformatics/EberhardLS92:::M. Eberhard::B. Leister::C. Stoppkotte:::MULTI: a program for multicomponent analysis of spectra.
journals/bioinformatics/BlazewiczKKMW97:::Jacek Blazewicz::J. Kaczmarek::Marta Kasprzak::W. T. Markiewicz::Jan Weglarz:::Sequential and parallel algorithms for DNA sequencing.
journals/bioinformatics/Mandler88b:::J. Mandler:::ANTIGEN: protein surface residue prediction.
journals/bioinformatics/PreissnerGF99:::Robert Preissner::Andrean Goede::Cornelius Frömmel:::Homonyms and synonyms in the Dictionary of Interfaces in Proteins (DIP).
journals/bioinformatics/McCarthyM03:::Eugene M. McCarthy::John F. McDonald:::LTR_STRUC: a novel search and identification program for LTR retrotransposons.
journals/bioinformatics/GrantDMO02:::J. D. Grant::Roland L. Dunbrack Jr.::Frank J. Manion::Michael F. Ochs:::BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster.
journals/bioinformatics/RollandBT97:::J. P. Rolland::P. Bon::D. Thomas:::MACS: automatic counting of objects based on shape recognition.
journals/bioinformatics/Zhang03:::Hongyu Zhang:::Alignment of BLAST High-scoring Segment Pairs Based on the Longest Increasing Subsequence Algorithm.
journals/bioinformatics/AllexSB99:::Carolyn F. Allex::Jude W. Shavlik::Frederick R. Blattner:::Neural network input representations that produce accurate consensus sequences from DNA fragment assemblies.
journals/bioinformatics/LetellierRM91:::T. Letellier::C. Reder::J. P. Mazat:::CONTROL: software for the analysis of the control of metabolic networks.
journals/bioinformatics/Bucka-LassenCH99:::K. Bucka-Lassen::O. Caprani::J. Hein:::Combining many multiple alignments in one improved alignment.
journals/bioinformatics/Collins93:::D. W. Collins:::FISH: a guide to protein-coding DNA sequences in the GenBank database.
journals/bioinformatics/ManWW00:::Michael Z. Man::Xuning Wang::Yixin Wang:::POWER_SAGE: comparing statistical tests for SAGE experiments.
journals/bioinformatics/DhaeseleerLS00:::Patrik D'haeseleer::Shoudan Liang::Roland Somogyi:::Genetic network inference: from co-expression clustering to reverse engineering.
journals/bioinformatics/NairTK95:::T. M. Nair::Sanjeev S. Tambe::Bhaskar D. Kulkarni:::Analysis of transcription control signals using artificial neural networks.
journals/bioinformatics/BachinskyYGKN97:::Alexander G. Bachinsky::Andrey A. Yarigin::E. H. Guseva::V. A. Kulichkov::Lily Ph. Nizolenko:::A bank of protein family patterns for rapid identification of possible functions of amino acid sequences.
journals/bioinformatics/BackofenWB99:::Rolf Backofen::Sebastian Will::Erich Bornberg-Bauer:::Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets.
journals/bioinformatics/Fenyo99:::D. Fenyo:::The Biopolymer Markup Language.
journals/bioinformatics/Bennett-LovseyHSM02:::Riccardo Bennett-Lovsey::Sarah E. Hart::Hiroki Shirai::Kenji Mizuguchi:::The SWIB and the MDM2 domains are homologous and share a common fold.
journals/bioinformatics/KondrakhinSK94:::Y. V. Kondrakhin::V. V. Shamin::Nikolay A. Kolchanov:::Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites.
journals/bioinformatics/KudoIS87:::Mineichi Kudo::Y. Iida::Masaru. Shimbo:::Syntactic pattern analysis of 5'-splice site sequences of mRNA precursors in higher eukaryote genes.
journals/bioinformatics/StojanovicCLZD02:::Nikola Stojanovic::Jean L. Chang::Jessica Lehoczky::Michael C. Zody::Ken Dewar:::Identification of mixups among DNA sequencing plates.
journals/bioinformatics/PrabakaranAGSUKS01:::Ponraj Prabakaran::Jianghong An::M. Michael Gromiha::Samuel Selvaraj::Hatsuho Uedaira::Hidetoshi Kono::Akinori Sarai:::Thermodynamic database for protein-nucleic acid interactions (ProNIT).
journals/bioinformatics/ArrigoGSRD91:::P. Arrigo::F. Giuliano::F. Scalia::A. Rapallo::G. Damiani:::Identification of a new motif on nucleic acid sequence data using Kohonen's self-organizing map.
